Results 101 - 120 of 305 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23740 | 3' | -62.2 | NC_005261.1 | + | 34468 | 0.7 | 0.379988 |
Target: 5'- cCGGGgGCcccGUACcuGCgGCGGGUGCugGAGu -3' miRNA: 3'- -GCCCgCG---CGUG--CG-CGUCCACGugCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 50023 | 0.7 | 0.387998 |
Target: 5'- gCGGGCGCccagccGC-CGCGCGacGGUGCagcgccgccGCGAGa -3' miRNA: 3'- -GCCCGCG------CGuGCGCGU--CCACG---------UGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 44319 | 0.7 | 0.396119 |
Target: 5'- gCGGGCGcCGCAgaCGgGGGgcugggGCACGAGg -3' miRNA: 3'- -GCCCGC-GCGUgcGCgUCCa-----CGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 107608 | 0.7 | 0.396119 |
Target: 5'- aCGGcaGCGgGCACaGCGUccGUGCGCGGGa -3' miRNA: 3'- -GCC--CGCgCGUG-CGCGucCACGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 63011 | 0.7 | 0.396119 |
Target: 5'- gCGGcCGCGCcCGCGCGGGcGCcggcgcccgcgGCGAGg -3' miRNA: 3'- -GCCcGCGCGuGCGCGUCCaCG-----------UGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 118929 | 0.7 | 0.396119 |
Target: 5'- gCGGGCGCgGCGcCGCGCGgcuggccgcGGcGCACGuGg -3' miRNA: 3'- -GCCCGCG-CGU-GCGCGU---------CCaCGUGCuC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 73385 | 0.7 | 0.404348 |
Target: 5'- gCGGccaCGCGCGCGUGCAGcaccagGUACGGGg -3' miRNA: 3'- -GCCc--GCGCGUGCGCGUCca----CGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 134192 | 0.7 | 0.404348 |
Target: 5'- aGGGCcugGCGCggcucgGCGCGCGGGU-CGCGGc -3' miRNA: 3'- gCCCG---CGCG------UGCGCGUCCAcGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 32367 | 0.7 | 0.404348 |
Target: 5'- gCGGGaGaCGCugGUGCAGGcgcgGCGCGGc -3' miRNA: 3'- -GCCCgC-GCGugCGCGUCCa---CGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 100609 | 0.7 | 0.40767 |
Target: 5'- gCGGcCGCGCAgGUGCAGGUcccgcucgcacaggcGCGCGGc -3' miRNA: 3'- -GCCcGCGCGUgCGCGUCCA---------------CGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 69969 | 0.69 | 0.412684 |
Target: 5'- cCGGGCGCGCGCuagaaCGCcGGgacgGC-CGAGu -3' miRNA: 3'- -GCCCGCGCGUGc----GCGuCCa---CGuGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 109199 | 0.69 | 0.412684 |
Target: 5'- uCGGGCGUGCGCagGCGCucGUagGCGCGGc -3' miRNA: 3'- -GCCCGCGCGUG--CGCGucCA--CGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 83505 | 0.69 | 0.412684 |
Target: 5'- -aGGCGCGCGCGcCGguGGaagcgGCACGc- -3' miRNA: 3'- gcCCGCGCGUGC-GCguCCa----CGUGCuc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 11846 | 0.69 | 0.412684 |
Target: 5'- gCGGGCGCGCGuuCGCGa----GCGCGAGc -3' miRNA: 3'- -GCCCGCGCGU--GCGCguccaCGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 104726 | 0.69 | 0.412684 |
Target: 5'- aGGGCGCGU-CGUGCcGcGUGCGCGc- -3' miRNA: 3'- gCCCGCGCGuGCGCGuC-CACGUGCuc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 98009 | 0.69 | 0.412684 |
Target: 5'- gCGGGgGCGCugGCGgCGaG-GCugGAGa -3' miRNA: 3'- -GCCCgCGCGugCGC-GUcCaCGugCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 38277 | 0.69 | 0.412684 |
Target: 5'- gGGGCG-GCugGUGCAcgcGGUGCugGc- -3' miRNA: 3'- gCCCGCgCGugCGCGU---CCACGugCuc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 98497 | 0.69 | 0.420277 |
Target: 5'- uCGGGCggguaaggugccgGCGUACGgGCAG--GCGCGAGa -3' miRNA: 3'- -GCCCG-------------CGCGUGCgCGUCcaCGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 3544 | 0.69 | 0.421126 |
Target: 5'- -cGGCGCGCA-GCGCGGcGgGCGCGGc -3' miRNA: 3'- gcCCGCGCGUgCGCGUC-CaCGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 48337 | 0.69 | 0.421126 |
Target: 5'- gGGGCGCGCGCG-GCGaG-GC-CGAGg -3' miRNA: 3'- gCCCGCGCGUGCgCGUcCaCGuGCUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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