miRNA display CGI


Results 61 - 80 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 83131 0.67 0.578001
Target:  5'- gCGcGCGCgGCACGCccuGCAGGUGCGgcAGg -3'
miRNA:   3'- -GCcCGCG-CGUGCG---CGUCCACGUgcUC- -5'
23740 3' -62.2 NC_005261.1 + 62882 0.67 0.578001
Target:  5'- gCGcGGCGCaGCcCGCGCgAGGcgGgGCGGGg -3'
miRNA:   3'- -GC-CCGCG-CGuGCGCG-UCCa-CgUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 137048 0.67 0.578001
Target:  5'- aGGGCGgaccgucgGCAgGCGCGGaG-GCGCGGGc -3'
miRNA:   3'- gCCCGCg-------CGUgCGCGUC-CaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 54894 0.67 0.578001
Target:  5'- -cGGCGCGCGCGUGCcGcaGCGCGc- -3'
miRNA:   3'- gcCCGCGCGUGCGCGuCcaCGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 133128 0.67 0.578001
Target:  5'- -cGGCGUGCGCGUcucccuGC-GGUGCGCGc- -3'
miRNA:   3'- gcCCGCGCGUGCG------CGuCCACGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 105777 0.67 0.575071
Target:  5'- aGGGCGCGCuccccggcgGCGUGUAGaagccgcacuccccGUacacGCGCGAGa -3'
miRNA:   3'- gCCCGCGCG---------UGCGCGUC--------------CA----CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 82366 0.67 0.575071
Target:  5'- uCGGcGCGCGCGCGCGCcgccagcgccgcccAGcc-CGCGGGg -3'
miRNA:   3'- -GCC-CGCGCGUGCGCG--------------UCcacGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 118549 0.67 0.572144
Target:  5'- gCGGcGCGCGCgaggacgccgugcccGCGCGCGcGGcgGCGCGc- -3'
miRNA:   3'- -GCC-CGCGCG---------------UGCGCGU-CCa-CGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 9619 0.67 0.568248
Target:  5'- gGGGUGgGCAgGCGggggugggggcUGGGUGgGCGGGg -3'
miRNA:   3'- gCCCGCgCGUgCGC-----------GUCCACgUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 88475 0.67 0.568248
Target:  5'- gCGGGcCGUGC-CGCGCcGGaGCGCGc- -3'
miRNA:   3'- -GCCC-GCGCGuGCGCGuCCaCGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 121793 0.67 0.568248
Target:  5'- -cGGCGgGCugG-GCAGGggGCGCGuGg -3'
miRNA:   3'- gcCCGCgCGugCgCGUCCa-CGUGCuC- -5'
23740 3' -62.2 NC_005261.1 + 76570 0.67 0.568248
Target:  5'- aGGGCGagcucguccucaCGCGCGaGCGGGUGgCGCGc- -3'
miRNA:   3'- gCCCGC------------GCGUGCgCGUCCAC-GUGCuc -5'
23740 3' -62.2 NC_005261.1 + 108046 0.67 0.56533
Target:  5'- aCGGGUGCagguuugcgaugguGguCGUGUA-GUGCGCGAGg -3'
miRNA:   3'- -GCCCGCG--------------CguGCGCGUcCACGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 14455 0.67 0.562416
Target:  5'- gGGGCGCGCGgcggagcuCGCGCugguccuccaacgcGGUGUaagacaGCGAGc -3'
miRNA:   3'- gCCCGCGCGU--------GCGCGu-------------CCACG------UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 15509 0.67 0.558537
Target:  5'- gGGGCGUGUgucgGCGUGCAG--GCAgGAGc -3'
miRNA:   3'- gCCCGCGCG----UGCGCGUCcaCGUgCUC- -5'
23740 3' -62.2 NC_005261.1 + 55037 0.67 0.558537
Target:  5'- cCGGcccCGCGCAgcUGCGCGGG-GCcgGCGAGc -3'
miRNA:   3'- -GCCc--GCGCGU--GCGCGUCCaCG--UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 83871 0.67 0.558537
Target:  5'- cCGGGC-CGgACGC-CGGGUcagcucugaGCGCGGGg -3'
miRNA:   3'- -GCCCGcGCgUGCGcGUCCA---------CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 10021 0.67 0.558537
Target:  5'- cCGGGCGgGCcuCGCGuCGGGgGCGCu-- -3'
miRNA:   3'- -GCCCGCgCGu-GCGC-GUCCaCGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 74903 0.67 0.558537
Target:  5'- gCGGccCGCGCuggcCGCGCGGGggaGgGCGAGg -3'
miRNA:   3'- -GCCc-GCGCGu---GCGCGUCCa--CgUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 106975 0.67 0.558537
Target:  5'- uCGGcGCGCGCGcCGCGCaccgcgucggccAGGUccGC-CGAGc -3'
miRNA:   3'- -GCC-CGCGCGU-GCGCG------------UCCA--CGuGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.