miRNA display CGI


Results 81 - 100 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 5285 0.67 0.558537
Target:  5'- cCGGcCGCgGUGCGCGCGGGUccCugGAGa -3'
miRNA:   3'- -GCCcGCG-CGUGCGCGUCCAc-GugCUC- -5'
23740 3' -62.2 NC_005261.1 + 83871 0.67 0.558537
Target:  5'- cCGGGC-CGgACGC-CGGGUcagcucugaGCGCGGGg -3'
miRNA:   3'- -GCCCGcGCgUGCGcGUCCA---------CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 10021 0.67 0.558537
Target:  5'- cCGGGCGgGCcuCGCGuCGGGgGCGCu-- -3'
miRNA:   3'- -GCCCGCgCGu-GCGC-GUCCaCGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 55037 0.67 0.558537
Target:  5'- cCGGcccCGCGCAgcUGCGCGGG-GCcgGCGAGc -3'
miRNA:   3'- -GCCc--GCGCGU--GCGCGUCCaCG--UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 19838 0.67 0.557568
Target:  5'- ----aGCGCGCGCGCGGcGUccucggcuuccucGCGCGAGa -3'
miRNA:   3'- gcccgCGCGUGCGCGUC-CA-------------CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 73726 0.67 0.5566
Target:  5'- uCGGcGUGCGCgcuuGCGCGCGgggguccGGUGCcacggccgcuucuACGAGg -3'
miRNA:   3'- -GCC-CGCGCG----UGCGCGU-------CCACG-------------UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 135254 0.67 0.552732
Target:  5'- gCGGGCGCGCggauggacaucAUGCggccugugcagaacgGCGGGUuccGCGCGAc -3'
miRNA:   3'- -GCCCGCGCG-----------UGCG---------------CGUCCA---CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 20443 0.67 0.548873
Target:  5'- gGGGaGCGCAgacgugccCGCGCGGGUGUggcgcuuccuuGCGGa -3'
miRNA:   3'- gCCCgCGCGU--------GCGCGUCCACG-----------UGCUc -5'
23740 3' -62.2 NC_005261.1 + 73658 0.67 0.548873
Target:  5'- aGGuagaCGCGCACGaCGCggAGGgcggGCGCGGGc -3'
miRNA:   3'- gCCc---GCGCGUGC-GCG--UCCa---CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 63782 0.67 0.548873
Target:  5'- aGGuccaCGUGCGCGCGCGGcUGCGUGAGc -3'
miRNA:   3'- gCCc---GCGCGUGCGCGUCcACGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 135746 0.67 0.548873
Target:  5'- -uGGCGCGCcucagcCGCGC-GGUGCGCu-- -3'
miRNA:   3'- gcCCGCGCGu-----GCGCGuCCACGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 118378 0.67 0.548873
Target:  5'- gGGGCGCGCggcccgAgGCGCuGGcgGcCGCGGGc -3'
miRNA:   3'- gCCCGCGCG------UgCGCGuCCa-C-GUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 136915 0.67 0.548873
Target:  5'- uGGGCcgcgcggccgcgGCGCAUGUGguGGUaCAUGGGc -3'
miRNA:   3'- gCCCG------------CGCGUGCGCguCCAcGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 98332 0.67 0.548873
Target:  5'- gGcGGCGCGCcccgugucgACGCggggGCGGGgguggGCGCGGGc -3'
miRNA:   3'- gC-CCGCGCG---------UGCG----CGUCCa----CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 110662 0.67 0.548873
Target:  5'- uGGuuuuCGUGUACGCGCAgcgccuGGaGCACGAGg -3'
miRNA:   3'- gCCc---GCGCGUGCGCGU------CCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 101104 0.67 0.548873
Target:  5'- gCGGccGCGCGCGCcuugGCGCccucguGGUccucGCGCGAGg -3'
miRNA:   3'- -GCC--CGCGCGUG----CGCGu-----CCA----CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 57957 0.67 0.547909
Target:  5'- cCGuGUGCGCACGCcggcgacGCAGGcGCGCGcGg -3'
miRNA:   3'- -GCcCGCGCGUGCG-------CGUCCaCGUGCuC- -5'
23740 3' -62.2 NC_005261.1 + 46451 0.67 0.546946
Target:  5'- aCGGcGUGCGUGaacaggcccucgaaGCGCAGGUGCagcucggcgcccuccGCGGGg -3'
miRNA:   3'- -GCC-CGCGCGUg-------------CGCGUCCACG---------------UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 45469 0.67 0.545984
Target:  5'- uGGGCGC-CACGCGCGuGcugaacacggccauGUGCAUGGc -3'
miRNA:   3'- gCCCGCGcGUGCGCGU-C--------------CACGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 45995 0.67 0.539262
Target:  5'- aCGGGCGCcauguGUGCGCgGCAGGcgaUGUcCGGGa -3'
miRNA:   3'- -GCCCGCG-----CGUGCG-CGUCC---ACGuGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.