miRNA display CGI


Results 41 - 60 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 21817 0.67 0.529709
Target:  5'- cCGGGCccgcggcggGCGCGCGUGCGGGcggGCuCGc- -3'
miRNA:   3'- -GCCCG---------CGCGUGCGCGUCCa--CGuGCuc -5'
23740 3' -62.2 NC_005261.1 + 22085 0.74 0.221984
Target:  5'- aGGGgGCGC-CGCGUGGGgGCGgGAGg -3'
miRNA:   3'- gCCCgCGCGuGCGCGUCCaCGUgCUC- -5'
23740 3' -62.2 NC_005261.1 + 22743 0.68 0.471145
Target:  5'- uCGGGCGCGgggcggcggcggccCACGCGUcugGGGgcggGCcccGCGAGa -3'
miRNA:   3'- -GCCCGCGC--------------GUGCGCG---UCCa---CG---UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 23206 0.67 0.558537
Target:  5'- gGGGCcCGCagcggcggccGCGCGCAaaagccGGUGCAgCGGGc -3'
miRNA:   3'- gCCCGcGCG----------UGCGCGU------CCACGU-GCUC- -5'
23740 3' -62.2 NC_005261.1 + 23786 0.66 0.627181
Target:  5'- aGGGUGgGCuCGCcgggGCAGGccgGCugGGGc -3'
miRNA:   3'- gCCCGCgCGuGCG----CGUCCa--CGugCUC- -5'
23740 3' -62.2 NC_005261.1 + 23843 0.66 0.627181
Target:  5'- aGGGUGgGCuCGCcgggGCAGGccgGCugGGGc -3'
miRNA:   3'- gCCCGCgCGuGCG----CGUCCa--CGugCUC- -5'
23740 3' -62.2 NC_005261.1 + 27310 0.66 0.637055
Target:  5'- cCGGGCcaacGCGCGCGgGUcaAGGggGCggaACGGGg -3'
miRNA:   3'- -GCCCG----CGCGUGCgCG--UCCa-CG---UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 28240 0.72 0.299396
Target:  5'- -cGGCGCGCGCGauaGCGGGggcUGCuCGGGg -3'
miRNA:   3'- gcCCGCGCGUGCg--CGUCC---ACGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 29210 0.74 0.207221
Target:  5'- gCGGGCGCGCGacuggggccCGCGCAGGcuacgccgcggcgccGCGCGAc -3'
miRNA:   3'- -GCCCGCGCGU---------GCGCGUCCa--------------CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 29567 0.69 0.446183
Target:  5'- -uGGCGCGCcugcugcagcggcGCGUGCAGGgcUGC-CGGGg -3'
miRNA:   3'- gcCCGCGCG-------------UGCGCGUCC--ACGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 29769 0.69 0.422827
Target:  5'- gCGGcGCGCGUACGCGCccauggccuacccggAGGccggcgccggcgGCGCGGGc -3'
miRNA:   3'- -GCC-CGCGCGUGCGCG---------------UCCa-----------CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 29897 0.73 0.261318
Target:  5'- cCGGGCccgcggcaGCGCGCGaGCGGcUGCGCGAGc -3'
miRNA:   3'- -GCCCG--------CGCGUGCgCGUCcACGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 30378 0.72 0.313009
Target:  5'- cCGGGCGC-CGCgGCGCGGGUGgAgGuGg -3'
miRNA:   3'- -GCCCGCGcGUG-CGCGUCCACgUgCuC- -5'
23740 3' -62.2 NC_005261.1 + 31322 0.71 0.35663
Target:  5'- gCGGGCGCGCucgccgccaGCGCGCcgcugcGGcgGCGCGuGg -3'
miRNA:   3'- -GCCCGCGCG---------UGCGCGu-----CCa-CGUGCuC- -5'
23740 3' -62.2 NC_005261.1 + 31389 0.71 0.334299
Target:  5'- cCGaGGaCGUGCGCGUGguGGUGCucuACGAc -3'
miRNA:   3'- -GC-CC-GCGCGUGCGCguCCACG---UGCUc -5'
23740 3' -62.2 NC_005261.1 + 31577 0.72 0.292763
Target:  5'- aCGGGCGCGCcggacgugaGCGCGCucGGcGCGCaGGGc -3'
miRNA:   3'- -GCCCGCGCG---------UGCGCGu-CCaCGUG-CUC- -5'
23740 3' -62.2 NC_005261.1 + 31755 0.68 0.473862
Target:  5'- uCGGGCagGCGCACGUGUAccUGCGCGc- -3'
miRNA:   3'- -GCCCG--CGCGUGCGCGUccACGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 31825 0.71 0.327087
Target:  5'- gCGGcGCGCGCugGCGCGcgccGUGCugGc- -3'
miRNA:   3'- -GCC-CGCGCGugCGCGUc---CACGugCuc -5'
23740 3' -62.2 NC_005261.1 + 31982 0.67 0.529709
Target:  5'- uGGGCccGCGCAC-CGC-GGUGCccgugccgccgcGCGAGu -3'
miRNA:   3'- gCCCG--CGCGUGcGCGuCCACG------------UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 32048 0.68 0.520218
Target:  5'- aCGGGCGCaaggacaugGC-CGCGCAGa-GCGCGGc -3'
miRNA:   3'- -GCCCGCG---------CGuGCGCGUCcaCGUGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.