miRNA display CGI


Results 61 - 80 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 32186 0.71 0.334299
Target:  5'- gCGGGCG-GCGCGCGCuGGaGCugGc- -3'
miRNA:   3'- -GCCCGCgCGUGCGCGuCCaCGugCuc -5'
23740 3' -62.2 NC_005261.1 + 32273 0.72 0.306145
Target:  5'- cCGaGGCGC-CGC-CGCuGGUGCugGAGg -3'
miRNA:   3'- -GC-CCGCGcGUGcGCGuCCACGugCUC- -5'
23740 3' -62.2 NC_005261.1 + 32367 0.7 0.404348
Target:  5'- gCGGGaGaCGCugGUGCAGGcgcgGCGCGGc -3'
miRNA:   3'- -GCCCgC-GCGugCGCGUCCa---CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 32912 0.73 0.243805
Target:  5'- gGGGCGCGCguggggggcgGCGgGCGGGggggGgGCGGGg -3'
miRNA:   3'- gCCCGCGCG----------UGCgCGUCCa---CgUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 33600 0.66 0.58779
Target:  5'- gGGGCG-GCGCcgGCGCGGGcgGCGgggccCGGGg -3'
miRNA:   3'- gCCCGCgCGUG--CGCGUCCa-CGU-----GCUC- -5'
23740 3' -62.2 NC_005261.1 + 33833 0.67 0.529709
Target:  5'- gGGGCGCGggccccCugGCGCuGGgcggGC-CGGGa -3'
miRNA:   3'- gCCCGCGC------GugCGCGuCCa---CGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 34364 0.68 0.501444
Target:  5'- cCGGGCGcCGCgcggcgccGCGCGCAgacgcGGcGCAgGAGu -3'
miRNA:   3'- -GCCCGC-GCG--------UGCGCGU-----CCaCGUgCUC- -5'
23740 3' -62.2 NC_005261.1 + 34468 0.7 0.379988
Target:  5'- cCGGGgGCcccGUACcuGCgGCGGGUGCugGAGu -3'
miRNA:   3'- -GCCCgCG---CGUG--CG-CGUCCACGugCUC- -5'
23740 3' -62.2 NC_005261.1 + 34921 0.75 0.197068
Target:  5'- gGGGCGCGgcCACGCGgGGGgcggccgGCGCGAc -3'
miRNA:   3'- gCCCGCGC--GUGCGCgUCCa------CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 35149 0.66 0.627181
Target:  5'- cCGcGGCGCaaGCACGCGCAugcGGacccgaGCGCaGAGa -3'
miRNA:   3'- -GC-CCGCG--CGUGCGCGU---CCa-----CGUG-CUC- -5'
23740 3' -62.2 NC_005261.1 + 35464 0.69 0.421126
Target:  5'- gCGcGGCGCGCGCGCGUcccgGGGUcccuGcCGCGGc -3'
miRNA:   3'- -GC-CCGCGCGUGCGCG----UCCA----C-GUGCUc -5'
23740 3' -62.2 NC_005261.1 + 36939 0.69 0.447062
Target:  5'- gGGGCccuGCGCugGCGCAaGGcccgccGCGCGGc -3'
miRNA:   3'- gCCCG---CGCGugCGCGU-CCa-----CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 36981 0.66 0.597608
Target:  5'- uCGGuGCGgGCuccagccggaGCcCGCGGGcUGCGCGGGg -3'
miRNA:   3'- -GCC-CGCgCG----------UGcGCGUCC-ACGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 38277 0.69 0.412684
Target:  5'- gGGGCG-GCugGUGCAcgcGGUGCugGc- -3'
miRNA:   3'- gCCCGCgCGugCGCGU---CCACGugCuc -5'
23740 3' -62.2 NC_005261.1 + 38345 0.74 0.232679
Target:  5'- gGGGCGCGCACGCccaGCGGGccuuugggGCGgcCGGGa -3'
miRNA:   3'- gCCCGCGCGUGCG---CGUCCa-------CGU--GCUC- -5'
23740 3' -62.2 NC_005261.1 + 38506 0.66 0.617311
Target:  5'- uGGaGCGUcguauaagGCGCGCGCuGGcUGCGCGc- -3'
miRNA:   3'- gCC-CGCG--------CGUGCGCGuCC-ACGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 38542 0.68 0.482973
Target:  5'- cCGGGCacaGCGCcgGCGCGCGGccaUGCgGCGGGu -3'
miRNA:   3'- -GCCCG---CGCG--UGCGCGUCc--ACG-UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 38945 0.76 0.158344
Target:  5'- cCGGGCGgGCcgcgGCGCGCGGGcUGCGCa-- -3'
miRNA:   3'- -GCCCGCgCG----UGCGCGUCC-ACGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 39978 0.69 0.447062
Target:  5'- gCGGGuUGCGCGCGcCGCcggcgugcgugaAGGcGUACGAGc -3'
miRNA:   3'- -GCCC-GCGCGUGC-GCG------------UCCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 40727 0.66 0.58779
Target:  5'- gGGGCGCGUggGCGUAGcccaucagcGUGUAUGuGu -3'
miRNA:   3'- gCCCGCGCGugCGCGUC---------CACGUGCuC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.