miRNA display CGI


Results 81 - 100 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 42189 0.68 0.472955
Target:  5'- aGGGCGCgagccgcuccacgGCGcCGCGCGGGcGCcccgccGCGAGc -3'
miRNA:   3'- gCCCGCG-------------CGU-GCGCGUCCaCG------UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 42357 0.66 0.58779
Target:  5'- uGGGCGgGCuggcCGCGCAaacguacuGGUGC-CGGc -3'
miRNA:   3'- gCCCGCgCGu---GCGCGU--------CCACGuGCUc -5'
23740 3' -62.2 NC_005261.1 + 43016 0.68 0.464837
Target:  5'- aGGGCGUGUACaGCGCc-GUGCGCu-- -3'
miRNA:   3'- gCCCGCGCGUG-CGCGucCACGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 43779 0.71 0.334299
Target:  5'- gGGGCG-GCGCGCGgAGGgcgcCGCGGGu -3'
miRNA:   3'- gCCCGCgCGUGCGCgUCCac--GUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 44028 0.66 0.597608
Target:  5'- gCGGGCGgcCGC-CGCGCGGcG-GcCGCGGGc -3'
miRNA:   3'- -GCCCGC--GCGuGCGCGUC-CaC-GUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 44224 0.67 0.533523
Target:  5'- gGGaGCGCGCgcugcuggccgcccaGCGCGCGgccgacgccgcGGcGCGCGGGg -3'
miRNA:   3'- gCC-CGCGCG---------------UGCGCGU-----------CCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 44319 0.7 0.396119
Target:  5'- gCGGGCGcCGCAgaCGgGGGgcugggGCACGAGg -3'
miRNA:   3'- -GCCCGC-GCGUgcGCgUCCa-----CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 44985 0.7 0.372089
Target:  5'- cCGGGCGgGC-CGCcaCAGGUGCuCGAu -3'
miRNA:   3'- -GCCCGCgCGuGCGc-GUCCACGuGCUc -5'
23740 3' -62.2 NC_005261.1 + 45469 0.67 0.545984
Target:  5'- uGGGCGC-CACGCGCGuGcugaacacggccauGUGCAUGGc -3'
miRNA:   3'- gCCCGCGcGUGCGCGU-C--------------CACGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 45663 0.67 0.529709
Target:  5'- gCGGGCGUGaucaACGCGCgccccGGGcUGCugaACGGGc -3'
miRNA:   3'- -GCCCGCGCg---UGCGCG-----UCC-ACG---UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 45995 0.67 0.539262
Target:  5'- aCGGGCGCcauguGUGCGCgGCAGGcgaUGUcCGGGa -3'
miRNA:   3'- -GCCCGCG-----CGUGCG-CGUCC---ACGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 46451 0.67 0.546946
Target:  5'- aCGGcGUGCGUGaacaggcccucgaaGCGCAGGUGCagcucggcgcccuccGCGGGg -3'
miRNA:   3'- -GCC-CGCGCGUg-------------CGCGUCCACG---------------UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 46794 0.72 0.273554
Target:  5'- cCGGGCGCccgucgcgGCGCGCGCGGaugGCGCGc- -3'
miRNA:   3'- -GCCCGCG--------CGUGCGCGUCca-CGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 48033 0.68 0.482973
Target:  5'- aGGGCGaggaGCACGCGCGcGcGguCGGGg -3'
miRNA:   3'- gCCCGCg---CGUGCGCGUcCaCguGCUC- -5'
23740 3' -62.2 NC_005261.1 + 48120 0.69 0.424531
Target:  5'- aCGGGCaugGCGCGCGCGggaaagaggggggaGGGUG-GCGAGa -3'
miRNA:   3'- -GCCCG---CGCGUGCGCg-------------UCCACgUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 48337 0.69 0.421126
Target:  5'- gGGGCGCGCGCG-GCGaG-GC-CGAGg -3'
miRNA:   3'- gCCCGCGCGUGCgCGUcCaCGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 49031 0.74 0.227278
Target:  5'- gGcGGCGgGCACGCGCAGGcagccGC-CGAGc -3'
miRNA:   3'- gC-CCGCgCGUGCGCGUCCa----CGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 49092 0.66 0.597608
Target:  5'- gCGGGCccGCugaGCGCGCGCAGcaGCuccuCGAGc -3'
miRNA:   3'- -GCCCG--CG---CGUGCGCGUCcaCGu---GCUC- -5'
23740 3' -62.2 NC_005261.1 + 49131 0.66 0.58387
Target:  5'- gCGGGCGgGaccccCGCGCGCAGGUauuuguccgcaaagGCggccacgGCGGGg -3'
miRNA:   3'- -GCCCGCgC-----GUGCGCGUCCA--------------CG-------UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 49225 0.68 0.520218
Target:  5'- -cGGCGCccaGCGCGCGCAGGUcggccgccGcCGCGGc -3'
miRNA:   3'- gcCCGCG---CGUGCGCGUCCA--------C-GUGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.