miRNA display CGI


Results 101 - 120 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 49470 0.74 0.221984
Target:  5'- gCGGGCGCGCAggcCGCGCGGaagcUGCAgcaGAGg -3'
miRNA:   3'- -GCCCGCGCGU---GCGCGUCc---ACGUg--CUC- -5'
23740 3' -62.2 NC_005261.1 + 50023 0.7 0.387998
Target:  5'- gCGGGCGCccagccGC-CGCGCGacGGUGCagcgccgccGCGAGa -3'
miRNA:   3'- -GCCCGCG------CGuGCGCGU--CCACG---------UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 50425 0.68 0.464837
Target:  5'- gCGGaGC-CGCuCGUGCAGcGUGCGCGuGa -3'
miRNA:   3'- -GCC-CGcGCGuGCGCGUC-CACGUGCuC- -5'
23740 3' -62.2 NC_005261.1 + 50998 0.68 0.510795
Target:  5'- gCGGcGCGUGgGCGCgGCGGGaGCucgGCGAGc -3'
miRNA:   3'- -GCC-CGCGCgUGCG-CGUCCaCG---UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 51210 0.68 0.482973
Target:  5'- cCGGGCGCGC-UGCuGCuGG-GCGCGc- -3'
miRNA:   3'- -GCCCGCGCGuGCG-CGuCCaCGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 51367 0.75 0.178926
Target:  5'- cCGGcGCGgaGUACGCGCAGGccgUGCGCGAa -3'
miRNA:   3'- -GCC-CGCg-CGUGCGCGUCC---ACGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 52958 0.68 0.464837
Target:  5'- uCGGaGCaGCGC-CGCGCcGGUGCggcgccggcagGCGGGg -3'
miRNA:   3'- -GCC-CG-CGCGuGCGCGuCCACG-----------UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 53077 0.74 0.221984
Target:  5'- gGGGCgGCGCACGgacCGCAGGaagGCACGcAGc -3'
miRNA:   3'- gCCCG-CGCGUGC---GCGUCCa--CGUGC-UC- -5'
23740 3' -62.2 NC_005261.1 + 53465 0.67 0.529709
Target:  5'- cCGGGCGgG-ACGCaGCAGGcGCGCa-- -3'
miRNA:   3'- -GCCCGCgCgUGCG-CGUCCaCGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 53704 0.68 0.501444
Target:  5'- cCGGGCGcCGCGCGCcgcggccagcuGCGGcGcgcccGCACGGGc -3'
miRNA:   3'- -GCCCGC-GCGUGCG-----------CGUC-Ca----CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 53871 0.68 0.464837
Target:  5'- gCGcGGCGCGCGCGCugucgagucgaaGCGGGcccGCuucGCGAGc -3'
miRNA:   3'- -GC-CCGCGCGUGCG------------CGUCCa--CG---UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 53944 0.68 0.514556
Target:  5'- gCGcGGCGCGcCGCGCucGCGGGUucggguggcaaaagaGCGCGGc -3'
miRNA:   3'- -GC-CCGCGC-GUGCG--CGUCCA---------------CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 54126 0.67 0.536389
Target:  5'- gCGGGCucgucccacggcacGcCGCACGCGgccGUGCGCGGGg -3'
miRNA:   3'- -GCCCG--------------C-GCGUGCGCgucCACGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 54894 0.67 0.578001
Target:  5'- -cGGCGCGCGCGUGCcGcaGCGCGc- -3'
miRNA:   3'- gcCCGCGCGUGCGCGuCcaCGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 55037 0.67 0.558537
Target:  5'- cCGGcccCGCGCAgcUGCGCGGG-GCcgGCGAGc -3'
miRNA:   3'- -GCCc--GCGCGU--GCGCGUCCaCG--UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 56120 0.74 0.21171
Target:  5'- gCGGGaGCGCGC-CGCAGGgcgggggGCGCGGGc -3'
miRNA:   3'- -GCCCgCGCGUGcGCGUCCa------CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 56253 0.68 0.492169
Target:  5'- cCGGGCGUggGCACGCuGCAcGG-GUacuGCGAGc -3'
miRNA:   3'- -GCCCGCG--CGUGCG-CGU-CCaCG---UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 57116 0.76 0.158344
Target:  5'- aGGaCGCGCACGCGCAGGguggGCagACGAu -3'
miRNA:   3'- gCCcGCGCGUGCGCGUCCa---CG--UGCUc -5'
23740 3' -62.2 NC_005261.1 + 57786 0.72 0.279843
Target:  5'- cCGcGGCGuCGCGCG-GCGGGcGCGCGAa -3'
miRNA:   3'- -GC-CCGC-GCGUGCgCGUCCaCGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 57845 0.68 0.462147
Target:  5'- gCGGGCGCGgGCggcaaggccucgGCGCucGGGUcgggaagucggccgGCACGGGg -3'
miRNA:   3'- -GCCCGCGCgUG------------CGCG--UCCA--------------CGUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.