miRNA display CGI


Results 21 - 40 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 133030 0.7 0.367404
Target:  5'- gCGGGCGCGCcacCGCGCAcgcacGUGCugcgcggcguuggcgGCGAGu -3'
miRNA:   3'- -GCCCGCGCGu--GCGCGUc----CACG---------------UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 132898 0.66 0.597608
Target:  5'- cCGGGCGC-CGCGgGC-GGcGC-CGAGc -3'
miRNA:   3'- -GCCCGCGcGUGCgCGuCCaCGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 132622 0.72 0.286245
Target:  5'- aGGGgGCGCugGCGCcgAGGacgcggGCGCGGc -3'
miRNA:   3'- gCCCgCGCGugCGCG--UCCa-----CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 132497 0.67 0.578001
Target:  5'- uGGGaCGCGCccgaccGCGaCGCGGGcugGgACGAGu -3'
miRNA:   3'- gCCC-GCGCG------UGC-GCGUCCa--CgUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 132156 0.66 0.58779
Target:  5'- uCGaGCGCGCcgcCGCuGCAGGcaGCGCGGGc -3'
miRNA:   3'- -GCcCGCGCGu--GCG-CGUCCa-CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 132102 0.66 0.597608
Target:  5'- aGGGCGgcCGCgACGCGCucGUGgaGCGGGa -3'
miRNA:   3'- gCCCGC--GCG-UGCGCGucCACg-UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 131919 0.68 0.501444
Target:  5'- aCGGGCuuuuugGCGCGCGCGGGacCGCGGu -3'
miRNA:   3'- -GCCCGcg----CGUGCGCGUCCacGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 131596 0.68 0.520218
Target:  5'- aGGccuacGCGCGCGCGCGCAcGUacGCGCGc- -3'
miRNA:   3'- gCC-----CGCGCGUGCGCGUcCA--CGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 129530 0.68 0.492169
Target:  5'- aCGaGGCGCGCgggcuACGcCGCaAGGUGCaagacgGCGGGc -3'
miRNA:   3'- -GC-CCGCGCG-----UGC-GCG-UCCACG------UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 129350 0.73 0.26738
Target:  5'- gCGGuaGCGCccccuuccGCGCGCGGGUcGCGCGGc -3'
miRNA:   3'- -GCCcgCGCG--------UGCGCGUCCA-CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 128100 0.72 0.299396
Target:  5'- aCGGGCGagcgGCGCgGCGCGGGgucggGC-CGAGu -3'
miRNA:   3'- -GCCCGCg---CGUG-CGCGUCCa----CGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 128062 0.66 0.607451
Target:  5'- cCGGGCcaugGCGgGCGgGCGGGcGaGCGAGc -3'
miRNA:   3'- -GCCCG----CGCgUGCgCGUCCaCgUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 127853 0.71 0.334299
Target:  5'- gGGGCGguCGCgGCGC-CAGG-GCACGAGc -3'
miRNA:   3'- gCCCGC--GCG-UGCGcGUCCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 127767 0.66 0.617311
Target:  5'- gCGGGCGCGaagACGCcCGGcUGCuCGAGc -3'
miRNA:   3'- -GCCCGCGCg--UGCGcGUCcACGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 127657 0.67 0.529709
Target:  5'- gGGGCGCGCGgGUuCGGG-GCGgGAc -3'
miRNA:   3'- gCCCGCGCGUgCGcGUCCaCGUgCUc -5'
23740 3' -62.2 NC_005261.1 + 126949 0.72 0.273554
Target:  5'- gGGGCGC-CGgGCGCGGGggcggcaGCGCGAa -3'
miRNA:   3'- gCCCGCGcGUgCGCGUCCa------CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 125922 0.72 0.299396
Target:  5'- gGGGCuCGcCACGCGCAcGGUagccgcugGCGCGGGg -3'
miRNA:   3'- gCCCGcGC-GUGCGCGU-CCA--------CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 125389 0.67 0.581913
Target:  5'- aCGGGUGCGUgcgguacguuccggaGCgGCGCGGGcgGCGCu-- -3'
miRNA:   3'- -GCCCGCGCG---------------UG-CGCGUCCa-CGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 125115 0.67 0.539262
Target:  5'- gGGGCGCGCuCG-GguGGUGCGu--- -3'
miRNA:   3'- gCCCGCGCGuGCgCguCCACGUgcuc -5'
23740 3' -62.2 NC_005261.1 + 125052 0.68 0.500513
Target:  5'- uCGGGCaGgGCcucuaugGCGCGCAGGUGgGCc-- -3'
miRNA:   3'- -GCCCG-CgCG-------UGCGCGUCCACgUGcuc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.