miRNA display CGI


Results 41 - 60 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 124783 0.66 0.606466
Target:  5'- gCGGGgGCccuuccgacagccGCucguCGCGCucuAGGUGCGCGuAGg -3'
miRNA:   3'- -GCCCgCG-------------CGu---GCGCG---UCCACGUGC-UC- -5'
23740 3' -62.2 NC_005261.1 + 123915 0.71 0.327087
Target:  5'- gGGGUGCgGCcCGaGCAGGUGCGCGc- -3'
miRNA:   3'- gCCCGCG-CGuGCgCGUCCACGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 123170 0.72 0.273554
Target:  5'- gCGGGCGCGCGgGCGU-GGUGgCugGuGu -3'
miRNA:   3'- -GCCCGCGCGUgCGCGuCCAC-GugCuC- -5'
23740 3' -62.2 NC_005261.1 + 122074 0.68 0.491246
Target:  5'- aCGGGuCGCGCACGCccgcgcgcagccaGCAGGcguagccCACGAa -3'
miRNA:   3'- -GCCC-GCGCGUGCG-------------CGUCCac-----GUGCUc -5'
23740 3' -62.2 NC_005261.1 + 121793 0.67 0.568248
Target:  5'- -cGGCGgGCugG-GCAGGggGCGCGuGg -3'
miRNA:   3'- gcCCGCgCGugCgCGUCCa-CGUGCuC- -5'
23740 3' -62.2 NC_005261.1 + 121164 0.71 0.349071
Target:  5'- aGGGuUGCcCGgGCGCucGGUGCACGGGg -3'
miRNA:   3'- gCCC-GCGcGUgCGCGu-CCACGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 121123 0.79 0.095866
Target:  5'- aGGGCGCGgAgGCGCGGGcgcgaGCGCGAGu -3'
miRNA:   3'- gCCCGCGCgUgCGCGUCCa----CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 121056 0.66 0.58779
Target:  5'- gCGGuuGUG-GCGCGCGGuGUGCGCGGc -3'
miRNA:   3'- -GCCcgCGCgUGCGCGUC-CACGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 120939 0.68 0.489402
Target:  5'- cCGGGCGCGggaagguggaggcuCGCGCcccGCGGG-GCGCGuGc -3'
miRNA:   3'- -GCCCGCGC--------------GUGCG---CGUCCaCGUGCuC- -5'
23740 3' -62.2 NC_005261.1 + 120325 0.67 0.530661
Target:  5'- gCGaGGCGCGCugcguccccgaGCGCGUcucccugcgcuggacGGUGCGCGAc -3'
miRNA:   3'- -GC-CCGCGCG-----------UGCGCGu--------------CCACGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 118929 0.7 0.396119
Target:  5'- gCGGGCGCgGCGcCGCGCGgcuggccgcGGcGCACGuGg -3'
miRNA:   3'- -GCCCGCG-CGU-GCGCGU---------CCaCGUGCuC- -5'
23740 3' -62.2 NC_005261.1 + 118827 0.66 0.604496
Target:  5'- uGGGCGCgGCacugccgcucugcgGCGCGgAGGgcgGCGCGc- -3'
miRNA:   3'- gCCCGCG-CG--------------UGCGCgUCCa--CGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 118684 0.74 0.215258
Target:  5'- gCGGGCgcugGCGCACGCGCGGcGUGguccugcucagcguCGCGGGc -3'
miRNA:   3'- -GCCCG----CGCGUGCGCGUC-CAC--------------GUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 118656 0.68 0.501444
Target:  5'- cCGGGC-CGCGCGCuCGGG-GC-UGAGg -3'
miRNA:   3'- -GCCCGcGCGUGCGcGUCCaCGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 118549 0.67 0.572144
Target:  5'- gCGGcGCGCGCgaggacgccgugcccGCGCGCGcGGcgGCGCGc- -3'
miRNA:   3'- -GCC-CGCGCG---------------UGCGCGU-CCa-CGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 118378 0.67 0.548873
Target:  5'- gGGGCGCGCggcccgAgGCGCuGGcgGcCGCGGGc -3'
miRNA:   3'- gCCCGCGCG------UgCGCGuCCa-C-GUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 117963 0.69 0.429671
Target:  5'- aCGGGCGCGCuCGCuGCcauGG-GCGCGc- -3'
miRNA:   3'- -GCCCGCGCGuGCG-CGu--CCaCGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 116492 0.74 0.226744
Target:  5'- gCGGGCGCGCGguauaaagagcgcCGcCGCGGcG-GCGCGAGg -3'
miRNA:   3'- -GCCCGCGCGU-------------GC-GCGUC-CaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 115841 0.68 0.520218
Target:  5'- uGGGCGCGUuggccCGCGCGGcccccGC-CGAGg -3'
miRNA:   3'- gCCCGCGCGu----GCGCGUCca---CGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 115163 0.68 0.462147
Target:  5'- uCGGGCGCcuccugcgcgauggGCACGCGCuucaGCACGGc -3'
miRNA:   3'- -GCCCGCG--------------CGUGCGCGuccaCGUGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.