miRNA display CGI


Results 61 - 80 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 114218 0.66 0.627181
Target:  5'- uCGaGGUgGUGCACuCGCGGGUGUACa-- -3'
miRNA:   3'- -GC-CCG-CGCGUGcGCGUCCACGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 113545 0.75 0.197068
Target:  5'- gGGGcCGUGCGCGCGCuGGacCGCGAGc -3'
miRNA:   3'- gCCC-GCGCGUGCGCGuCCacGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 112065 0.71 0.349071
Target:  5'- uCGGGCGUGCccucgucggcgaGgGCGCcacguGGUGCGCGGu -3'
miRNA:   3'- -GCCCGCGCG------------UgCGCGu----CCACGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 111459 0.68 0.464837
Target:  5'- cCGGGCGCcgGCgaggccaaaagGCGgGCGGGUGagauggcaaGCGAGg -3'
miRNA:   3'- -GCCCGCG--CG-----------UGCgCGUCCACg--------UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 110662 0.67 0.548873
Target:  5'- uGGuuuuCGUGUACGCGCAgcgccuGGaGCACGAGg -3'
miRNA:   3'- gCCc---GCGCGUGCGCGU------CCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 110542 0.67 0.578001
Target:  5'- aGGGCGCGCGCaCGgacCAGGccGCACa-- -3'
miRNA:   3'- gCCCGCGCGUGcGC---GUCCa-CGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 110242 0.66 0.617311
Target:  5'- uGGGCgGCGCgGCGCcCGGGggGCuGCGGGc -3'
miRNA:   3'- gCCCG-CGCG-UGCGcGUCCa-CG-UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 109199 0.69 0.412684
Target:  5'- uCGGGCGUGCGCagGCGCucGUagGCGCGGc -3'
miRNA:   3'- -GCCCGCGCGUG--CGCGucCA--CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 108890 0.66 0.617311
Target:  5'- aCGGcCGCGCugcccgccgGCGaGCGGG-GCGCGGGg -3'
miRNA:   3'- -GCCcGCGCG---------UGCgCGUCCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 108484 0.68 0.492169
Target:  5'- -cGGCGCGCACGCGCGc---CGCGAc -3'
miRNA:   3'- gcCCGCGCGUGCGCGUccacGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 108177 0.74 0.216794
Target:  5'- aGGGCGCGCGgcCGCgGCuccGG-GCGCGAGa -3'
miRNA:   3'- gCCCGCGCGU--GCG-CGu--CCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 108046 0.67 0.56533
Target:  5'- aCGGGUGCagguuugcgaugguGguCGUGUA-GUGCGCGAGg -3'
miRNA:   3'- -GCCCGCG--------------CguGCGCGUcCACGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 107608 0.7 0.396119
Target:  5'- aCGGcaGCGgGCACaGCGUccGUGCGCGGGa -3'
miRNA:   3'- -GCC--CGCgCGUG-CGCGucCACGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 107258 0.74 0.216794
Target:  5'- gCGGGCGCGCgggcACGgGCGGGcGCGCa-- -3'
miRNA:   3'- -GCCCGCGCG----UGCgCGUCCaCGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 107036 0.66 0.637055
Target:  5'- aGGGCGCGcCACGCGCcGcGUaCACc-- -3'
miRNA:   3'- gCCCGCGC-GUGCGCGuC-CAcGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 106975 0.67 0.558537
Target:  5'- uCGGcGCGCGCGcCGCGCaccgcgucggccAGGUccGC-CGAGc -3'
miRNA:   3'- -GCC-CGCGCGU-GCGCG------------UCCA--CGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 106560 0.66 0.637055
Target:  5'- cCGGGCcgGCGCGCGCcggcccCGGGgccgccGCGCGGc -3'
miRNA:   3'- -GCCCG--CGCGUGCGc-----GUCCa-----CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 106185 0.66 0.637055
Target:  5'- gGGGCGC-CGCGCGCGuGGcGC-CGu- -3'
miRNA:   3'- gCCCGCGcGUGCGCGU-CCaCGuGCuc -5'
23740 3' -62.2 NC_005261.1 + 106123 0.68 0.482973
Target:  5'- -cGGCGCGCGCGCGCcGGcaacGC-CGGa -3'
miRNA:   3'- gcCCGCGCGUGCGCGuCCa---CGuGCUc -5'
23740 3' -62.2 NC_005261.1 + 105866 0.72 0.279843
Target:  5'- uCGGcGaUGCGguUGgGCAGGUGCACGAu -3'
miRNA:   3'- -GCC-C-GCGCguGCgCGUCCACGUGCUc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.