miRNA display CGI


Results 81 - 100 of 305 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 105777 0.67 0.575071
Target:  5'- aGGGCGCGCuccccggcgGCGUGUAGaagccgcacuccccGUacacGCGCGAGa -3'
miRNA:   3'- gCCCGCGCG---------UGCGCGUC--------------CA----CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 105593 0.68 0.474769
Target:  5'- gGGGCGCGUGCGCGCGacgaacgccugcgGCACGu- -3'
miRNA:   3'- gCCCGCGCGUGCGCGUcca----------CGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 105546 0.67 0.539262
Target:  5'- uCGGGCuggccGCaCGCGCGCAGGgccagGUACGc- -3'
miRNA:   3'- -GCCCG-----CGcGUGCGCGUCCa----CGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 105374 0.8 0.09345
Target:  5'- -aGGCG-GCGCGCGCGGGUGCGCGc- -3'
miRNA:   3'- gcCCGCgCGUGCGCGUCCACGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 105298 0.75 0.178926
Target:  5'- cCGGGCGCGCGaGCGCGGGguccucGCACu-- -3'
miRNA:   3'- -GCCCGCGCGUgCGCGUCCa-----CGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 105125 0.78 0.12012
Target:  5'- gCGGGCGCgggccgccgGCGCGCGCAGGUccucgcgGCuCGAGg -3'
miRNA:   3'- -GCCCGCG---------CGUGCGCGUCCA-------CGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 104836 0.68 0.492169
Target:  5'- gGGGcCGCGCcacgcggacCGCGCGGGUcacGCACGc- -3'
miRNA:   3'- gCCC-GCGCGu--------GCGCGUCCA---CGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 104726 0.69 0.412684
Target:  5'- aGGGCGCGU-CGUGCcGcGUGCGCGc- -3'
miRNA:   3'- gCCCGCGCGuGCGCGuC-CACGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 104173 0.79 0.098342
Target:  5'- gCGGGCGC-CGCGCGCGGGUcGUcggGCGGGa -3'
miRNA:   3'- -GCCCGCGcGUGCGCGUCCA-CG---UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 103927 0.66 0.607451
Target:  5'- uCGGGCGCgGCgucugccagACGCuGCAGcG-GCGCGAc -3'
miRNA:   3'- -GCCCGCG-CG---------UGCG-CGUC-CaCGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 103286 0.69 0.421126
Target:  5'- cCGGGUGC-CGCGCGCAGcccCGCGAa -3'
miRNA:   3'- -GCCCGCGcGUGCGCGUCcacGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 102445 0.69 0.438317
Target:  5'- -cGGCGCGCcgcccggccucgGCGCGCAGGcGC-CGGa -3'
miRNA:   3'- gcCCGCGCG------------UGCGCGUCCaCGuGCUc -5'
23740 3' -62.2 NC_005261.1 + 101104 0.67 0.548873
Target:  5'- gCGGccGCGCGCGCcuugGCGCccucguGGUccucGCGCGAGg -3'
miRNA:   3'- -GCC--CGCGCGUG----CGCGu-----CCA----CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 100724 0.77 0.150354
Target:  5'- gCGGccgcgccGCGCGCGCGCGCGGcGgcgcgcgGCACGAGc -3'
miRNA:   3'- -GCC-------CGCGCGUGCGCGUC-Ca------CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 100662 0.71 0.35663
Target:  5'- -cGGCGCGCGuCGCG-GGGUucgcGCGCGAGu -3'
miRNA:   3'- gcCCGCGCGU-GCGCgUCCA----CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 100609 0.7 0.40767
Target:  5'- gCGGcCGCGCAgGUGCAGGUcccgcucgcacaggcGCGCGGc -3'
miRNA:   3'- -GCCcGCGCGUgCGCGUCCA---------------CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 100318 0.77 0.147044
Target:  5'- gCGGGCGCGCucgaucuccAgGCGCAGGUuCACGAu -3'
miRNA:   3'- -GCCCGCGCG---------UgCGCGUCCAcGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 100242 0.66 0.58681
Target:  5'- cCGGGCGCacgucuGCcagcccccagucgGCGCGCcGGUggcGCACGAa -3'
miRNA:   3'- -GCCCGCG------CG-------------UGCGCGuCCA---CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 99541 0.66 0.58681
Target:  5'- aGGGCGCGUccaggcgGCGCGCcAGGaagGCGuCGuAGc -3'
miRNA:   3'- gCCCGCGCG-------UGCGCG-UCCa--CGU-GC-UC- -5'
23740 3' -62.2 NC_005261.1 + 99341 0.69 0.455903
Target:  5'- -cGGCGCGCccagcagcaGCGCGCAcGUG-ACGAGg -3'
miRNA:   3'- gcCCGCGCG---------UGCGCGUcCACgUGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.