miRNA display CGI


Results 101 - 120 of 305 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 99088 0.68 0.492169
Target:  5'- aGGGCgGCGCgGCGCGCAGcGgcuUGCucGCGAu -3'
miRNA:   3'- gCCCG-CGCG-UGCGCGUC-C---ACG--UGCUc -5'
23740 3' -62.2 NC_005261.1 + 98733 0.66 0.597608
Target:  5'- gGGGCaCGCGgcCGCGCGGGcguuggccGCGCGGu -3'
miRNA:   3'- gCCCGcGCGU--GCGCGUCCa-------CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 98497 0.69 0.420277
Target:  5'- uCGGGCggguaaggugccgGCGUACGgGCAG--GCGCGAGa -3'
miRNA:   3'- -GCCCG-------------CGCGUGCgCGUCcaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 98332 0.67 0.548873
Target:  5'- gGcGGCGCGCcccgugucgACGCggggGCGGGgguggGCGCGGGc -3'
miRNA:   3'- gC-CCGCGCG---------UGCG----CGUCCa----CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 98102 0.68 0.501444
Target:  5'- gGGGCGCG-GCGgGCGGcgagGCugGGGa -3'
miRNA:   3'- gCCCGCGCgUGCgCGUCca--CGugCUC- -5'
23740 3' -62.2 NC_005261.1 + 98009 0.69 0.412684
Target:  5'- gCGGGgGCGCugGCGgCGaG-GCugGAGa -3'
miRNA:   3'- -GCCCgCGCGugCGC-GUcCaCGugCUC- -5'
23740 3' -62.2 NC_005261.1 + 97850 0.66 0.607451
Target:  5'- gCGGGCGC-CGC-CGCGGcaGCGCGGc -3'
miRNA:   3'- -GCCCGCGcGUGcGCGUCcaCGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 97634 0.74 0.232679
Target:  5'- gCGGGCGgaGCGgGCGCGGGUGC-CGc- -3'
miRNA:   3'- -GCCCGCg-CGUgCGCGUCCACGuGCuc -5'
23740 3' -62.2 NC_005261.1 + 97418 0.71 0.334299
Target:  5'- gCGGGCGCGC-CGgGCcugcccuuGG-GCGCGGGu -3'
miRNA:   3'- -GCCCGCGCGuGCgCGu-------CCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 97026 0.67 0.528757
Target:  5'- uCGGGCGCGCccggcCGCccacauccacaggGCGGGgggcggcggGCACGAu -3'
miRNA:   3'- -GCCCGCGCGu----GCG-------------CGUCCa--------CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 96113 0.66 0.627181
Target:  5'- uCGGGaCGuCGCugGCcauggucgaccuGCGGcGgcgGCACGAGa -3'
miRNA:   3'- -GCCC-GC-GCGugCG------------CGUC-Ca--CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 95671 0.74 0.216794
Target:  5'- aCGGGCGCgggugugaGCACGUGCAcGaGCGCGAGu -3'
miRNA:   3'- -GCCCGCG--------CGUGCGCGUcCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 94876 0.66 0.617311
Target:  5'- cCGGGCGgGCggcccGCGUGCAGccacacgcgcGcGCugGAGg -3'
miRNA:   3'- -GCCCGCgCG-----UGCGCGUC----------CaCGugCUC- -5'
23740 3' -62.2 NC_005261.1 + 93912 0.71 0.35663
Target:  5'- gCGGGCGCgGCGCcCGCGGGcuUGCGCc-- -3'
miRNA:   3'- -GCCCGCG-CGUGcGCGUCC--ACGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 93759 0.73 0.238187
Target:  5'- gCGGcccGCGCGCGCGCggcgucgcaGCAGGUGCcccCGGGa -3'
miRNA:   3'- -GCC---CGCGCGUGCG---------CGUCCACGu--GCUC- -5'
23740 3' -62.2 NC_005261.1 + 93479 0.69 0.447062
Target:  5'- gGGGCGCGCGuCGCccGCGGcGaagcGCGCGAa -3'
miRNA:   3'- gCCCGCGCGU-GCG--CGUC-Ca---CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 93343 0.66 0.607451
Target:  5'- cCGcGCGCaGCGCGCGCAGcgcgcgccaGUGCGCcGGc -3'
miRNA:   3'- -GCcCGCG-CGUGCGCGUC---------CACGUGcUC- -5'
23740 3' -62.2 NC_005261.1 + 92811 0.79 0.106134
Target:  5'- cCGGGCGCGCGgGCGUGGGaccGCGCGcAGa -3'
miRNA:   3'- -GCCCGCGCGUgCGCGUCCa--CGUGC-UC- -5'
23740 3' -62.2 NC_005261.1 + 90735 0.66 0.591714
Target:  5'- uGGGCcgcgccugagGCGCugGCGCGGGacuuccccgaggccGC-CGAGg -3'
miRNA:   3'- gCCCG----------CGCGugCGCGUCCa-------------CGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 90442 0.86 0.034488
Target:  5'- gCGGGCGCGCgcugcacuuugugcGCGCGCAcGUGCGCGAGa -3'
miRNA:   3'- -GCCCGCGCG--------------UGCGCGUcCACGUGCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.