miRNA display CGI


Results 121 - 140 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 90238 0.68 0.520218
Target:  5'- gCGGGCGCGCcgucggguaucaGgGCGCcaAGGUcCugGAGc -3'
miRNA:   3'- -GCCCGCGCG------------UgCGCG--UCCAcGugCUC- -5'
23740 3' -62.2 NC_005261.1 + 89099 0.76 0.158344
Target:  5'- cCGGGCGCGCugGCGCGcgcguGGcacUGCGCGc- -3'
miRNA:   3'- -GCCCGCGCGugCGCGU-----CC---ACGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 88475 0.67 0.568248
Target:  5'- gCGGGcCGUGC-CGCGCcGGaGCGCGc- -3'
miRNA:   3'- -GCCC-GCGCGuGCGCGuCCaCGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 88376 0.66 0.597608
Target:  5'- aCGGcCGaGCGCGCGCccaAGGUGUaccucgacgGCGAGg -3'
miRNA:   3'- -GCCcGCgCGUGCGCG---UCCACG---------UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 88149 0.66 0.617311
Target:  5'- gCGGGgGCGCcccggcCGCGCAGccggGC-CGGGg -3'
miRNA:   3'- -GCCCgCGCGu-----GCGCGUCca--CGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 86256 0.72 0.299396
Target:  5'- uCGuGuGCGCGCACGCGUgccGGUcgucGCGCGAGc -3'
miRNA:   3'- -GC-C-CGCGCGUGCGCGu--CCA----CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 84972 0.68 0.492169
Target:  5'- uCGGGCGCGUccgcgAUGCGCcGGcgcacccagUGCAUGAc -3'
miRNA:   3'- -GCCCGCGCG-----UGCGCGuCC---------ACGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 84679 0.68 0.510795
Target:  5'- gCGGcCGCGCacacgaagccgGCGCGCGGGcaCGCGAGc -3'
miRNA:   3'- -GCCcGCGCG-----------UGCGCGUCCacGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 84255 0.71 0.334299
Target:  5'- gGGGCGCuuggcccccgGCAUgGCGCAGGUGCcgccgGCGGc -3'
miRNA:   3'- gCCCGCG----------CGUG-CGCGUCCACG-----UGCUc -5'
23740 3' -62.2 NC_005261.1 + 83871 0.67 0.558537
Target:  5'- cCGGGC-CGgACGC-CGGGUcagcucugaGCGCGGGg -3'
miRNA:   3'- -GCCCGcGCgUGCGcGUCCA---------CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 83679 0.71 0.327087
Target:  5'- uGGGCGCGCAgCGCGCcgccgAGGcgGCGCc-- -3'
miRNA:   3'- gCCCGCGCGU-GCGCG-----UCCa-CGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 83505 0.69 0.412684
Target:  5'- -aGGCGCGCGCGcCGguGGaagcgGCACGc- -3'
miRNA:   3'- gcCCGCGCGUGC-GCguCCa----CGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 83383 0.69 0.45324
Target:  5'- gCGcGGCGaGCGCgGCcucggccgaggcgaGCAGGUGCGCGAa -3'
miRNA:   3'- -GC-CCGCgCGUG-CG--------------CGUCCACGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 83131 0.67 0.578001
Target:  5'- gCGcGCGCgGCACGCccuGCAGGUGCGgcAGg -3'
miRNA:   3'- -GCcCGCG-CGUGCG---CGUCCACGUgcUC- -5'
23740 3' -62.2 NC_005261.1 + 82366 0.67 0.575071
Target:  5'- uCGGcGCGCGCGCGCGCcgccagcgccgcccAGcc-CGCGGGg -3'
miRNA:   3'- -GCC-CGCGCGUGCGCG--------------UCcacGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 82172 0.67 0.529709
Target:  5'- gCGcGGCGCGgAagGCGCGGcGUGCGCa-- -3'
miRNA:   3'- -GC-CCGCGCgUg-CGCGUC-CACGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 77663 0.73 0.261318
Target:  5'- -cGGCGCcuGCAgGCGCAGG-GCGCGGa -3'
miRNA:   3'- gcCCGCG--CGUgCGCGUCCaCGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 77262 0.66 0.611393
Target:  5'- aGGGCGCGCucGCGgGCGGcGUcuGCauugcgcuucccgucGCGAGc -3'
miRNA:   3'- gCCCGCGCG--UGCgCGUC-CA--CG---------------UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 76570 0.67 0.568248
Target:  5'- aGGGCGagcucguccucaCGCGCGaGCGGGUGgCGCGc- -3'
miRNA:   3'- gCCCGC------------GCGUGCgCGUCCAC-GUGCuc -5'
23740 3' -62.2 NC_005261.1 + 76079 0.66 0.597608
Target:  5'- gCGGGCuGCuGCGCcucgugGCGCuGGaGCugGAGa -3'
miRNA:   3'- -GCCCG-CG-CGUG------CGCGuCCaCGugCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.