Results 41 - 60 of 305 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23740 | 3' | -62.2 | NC_005261.1 | + | 104173 | 0.79 | 0.098342 |
Target: 5'- gCGGGCGC-CGCGCGCGGGUcGUcggGCGGGa -3' miRNA: 3'- -GCCCGCGcGUGCGCGUCCA-CG---UGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 121123 | 0.79 | 0.095866 |
Target: 5'- aGGGCGCGgAgGCGCGGGcgcgaGCGCGAGu -3' miRNA: 3'- gCCCGCGCgUgCGCGUCCa----CGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 105374 | 0.8 | 0.09345 |
Target: 5'- -aGGCG-GCGCGCGCGGGUGCGCGc- -3' miRNA: 3'- gcCCGCgCGUGCGCGUCCACGUGCuc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 3949 | 0.8 | 0.09345 |
Target: 5'- uGGGCGCGUACGCGCgccgcAGGcucUGCAgGAGg -3' miRNA: 3'- gCCCGCGCGUGCGCG-----UCC---ACGUgCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 71970 | 0.81 | 0.078087 |
Target: 5'- gGGGCGCggaGCGCGCgGCAGGUGCGCa-- -3' miRNA: 3'- gCCCGCG---CGUGCG-CGUCCACGUGcuc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 38945 | 0.76 | 0.158344 |
Target: 5'- cCGGGCGgGCcgcgGCGCGCGGGcUGCGCa-- -3' miRNA: 3'- -GCCCGCgCG----UGCGCGUCC-ACGUGcuc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 16175 | 0.76 | 0.166307 |
Target: 5'- gGGGCGCGgGCgugGCGgGGGUGgGCGGGg -3' miRNA: 3'- gCCCGCGCgUG---CGCgUCCACgUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 137753 | 0.74 | 0.21171 |
Target: 5'- uCGGcGCGCGCGgGgGCGGG-GUGCGGGg -3' miRNA: 3'- -GCC-CGCGCGUgCgCGUCCaCGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 59085 | 0.74 | 0.21171 |
Target: 5'- gCGGGUGCGcCGCGCccucgcgcucGCAGGcgcGCGCGAGc -3' miRNA: 3'- -GCCCGCGC-GUGCG----------CGUCCa--CGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 56120 | 0.74 | 0.21171 |
Target: 5'- gCGGGaGCGCGC-CGCAGGgcgggggGCGCGGGc -3' miRNA: 3'- -GCCCgCGCGUGcGCGUCCa------CGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 522 | 0.74 | 0.21171 |
Target: 5'- aGGGCGCGgGCGgGCGGGggGCAgGGc -3' miRNA: 3'- gCCCGCGCgUGCgCGUCCa-CGUgCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 70 | 0.74 | 0.21171 |
Target: 5'- uCGGcGCGCGCGgGgGCGGG-GUGCGGGg -3' miRNA: 3'- -GCC-CGCGCGUgCgCGUCCaCGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 29210 | 0.74 | 0.207221 |
Target: 5'- gCGGGCGCGCGacuggggccCGCGCAGGcuacgccgcggcgccGCGCGAc -3' miRNA: 3'- -GCCCGCGCGU---------GCGCGUCCa--------------CGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 58470 | 0.75 | 0.201847 |
Target: 5'- cCGGGCGCGUAUGagcCGCAGGccgGCGCGcGg -3' miRNA: 3'- -GCCCGCGCGUGC---GCGUCCa--CGUGCuC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 113545 | 0.75 | 0.197068 |
Target: 5'- gGGGcCGUGCGCGCGCuGGacCGCGAGc -3' miRNA: 3'- gCCC-GCGCGUGCGCGuCCacGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 34921 | 0.75 | 0.197068 |
Target: 5'- gGGGCGCGgcCACGCGgGGGgcggccgGCGCGAc -3' miRNA: 3'- gCCCGCGC--GUGCGCgUCCa------CGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 105298 | 0.75 | 0.178926 |
Target: 5'- cCGGGCGCGCGaGCGCGGGguccucGCACu-- -3' miRNA: 3'- -GCCCGCGCGUgCGCGUCCa-----CGUGcuc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 64484 | 0.75 | 0.178926 |
Target: 5'- cCGGGUGCaGCGggugGCGCGGGUGCuCGGGg -3' miRNA: 3'- -GCCCGCG-CGUg---CGCGUCCACGuGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 51367 | 0.75 | 0.178926 |
Target: 5'- cCGGcGCGgaGUACGCGCAGGccgUGCGCGAa -3' miRNA: 3'- -GCC-CGCg-CGUGCGCGUCC---ACGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 59565 | 0.76 | 0.166307 |
Target: 5'- uCGGcGCGCGCGCGCGCcgcagcGGGUGcCGCGc- -3' miRNA: 3'- -GCC-CGCGCGUGCGCG------UCCAC-GUGCuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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