miRNA display CGI


Results 81 - 100 of 305 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 67111 0.74 0.232679
Target:  5'- gCGGGCG-GCGCGCGCA-GUGCgGCGGc -3'
miRNA:   3'- -GCCCGCgCGUGCGCGUcCACG-UGCUc -5'
23740 3' -62.2 NC_005261.1 + 97634 0.74 0.232679
Target:  5'- gCGGGCGgaGCGgGCGCGGGUGC-CGc- -3'
miRNA:   3'- -GCCCGCg-CGUgCGCGUCCACGuGCuc -5'
23740 3' -62.2 NC_005261.1 + 93759 0.73 0.238187
Target:  5'- gCGGcccGCGCGCGCGCggcgucgcaGCAGGUGCcccCGGGa -3'
miRNA:   3'- -GCC---CGCGCGUGCG---------CGUCCACGu--GCUC- -5'
23740 3' -62.2 NC_005261.1 + 32912 0.73 0.243805
Target:  5'- gGGGCGCGCguggggggcgGCGgGCGGGggggGgGCGGGg -3'
miRNA:   3'- gCCCGCGCG----------UGCgCGUCCa---CgUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 74951 0.73 0.249532
Target:  5'- gCGGGCGCGCucgGCGCGCucgAGGccGCGCGc- -3'
miRNA:   3'- -GCCCGCGCG---UGCGCG---UCCa-CGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 133542 0.73 0.261318
Target:  5'- gGGGCGCGCA-GCGCAGcaugcUGCuCGGGg -3'
miRNA:   3'- gCCCGCGCGUgCGCGUCc----ACGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 77663 0.73 0.261318
Target:  5'- -cGGCGCcuGCAgGCGCAGG-GCGCGGa -3'
miRNA:   3'- gcCCGCG--CGUgCGCGUCCaCGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 116492 0.74 0.226744
Target:  5'- gCGGGCGCGCGguauaaagagcgcCGcCGCGGcG-GCGCGAGg -3'
miRNA:   3'- -GCCCGCGCGU-------------GC-GCGUC-CaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 53077 0.74 0.221984
Target:  5'- gGGGCgGCGCACGgacCGCAGGaagGCACGcAGc -3'
miRNA:   3'- gCCCG-CGCGUGC---GCGUCCa--CGUGC-UC- -5'
23740 3' -62.2 NC_005261.1 + 49470 0.74 0.221984
Target:  5'- gCGGGCGCGCAggcCGCGCGGaagcUGCAgcaGAGg -3'
miRNA:   3'- -GCCCGCGCGU---GCGCGUCc---ACGUg--CUC- -5'
23740 3' -62.2 NC_005261.1 + 56120 0.74 0.21171
Target:  5'- gCGGGaGCGCGC-CGCAGGgcgggggGCGCGGGc -3'
miRNA:   3'- -GCCCgCGCGUGcGCGUCCa------CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 59085 0.74 0.21171
Target:  5'- gCGGGUGCGcCGCGCccucgcgcucGCAGGcgcGCGCGAGc -3'
miRNA:   3'- -GCCCGCGC-GUGCG----------CGUCCa--CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 137753 0.74 0.21171
Target:  5'- uCGGcGCGCGCGgGgGCGGG-GUGCGGGg -3'
miRNA:   3'- -GCC-CGCGCGUgCgCGUCCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 138193 0.74 0.21171
Target:  5'- aGGGCGCGgGCGgGCGGGggGCAgGGc -3'
miRNA:   3'- gCCCGCGCgUGCgCGUCCa-CGUgCUc -5'
23740 3' -62.2 NC_005261.1 + 118684 0.74 0.215258
Target:  5'- gCGGGCgcugGCGCACGCGCGGcGUGguccugcucagcguCGCGGGc -3'
miRNA:   3'- -GCCCG----CGCGUGCGCGUC-CAC--------------GUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 95671 0.74 0.216794
Target:  5'- aCGGGCGCgggugugaGCACGUGCAcGaGCGCGAGu -3'
miRNA:   3'- -GCCCGCG--------CGUGCGCGUcCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 108177 0.74 0.216794
Target:  5'- aGGGCGCGCGgcCGCgGCuccGG-GCGCGAGa -3'
miRNA:   3'- gCCCGCGCGU--GCG-CGu--CCaCGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 107258 0.74 0.216794
Target:  5'- gCGGGCGCGCgggcACGgGCGGGcGCGCa-- -3'
miRNA:   3'- -GCCCGCGCG----UGCgCGUCCaCGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 18979 0.74 0.22146
Target:  5'- gGGGCGCGCACGaaaGuCAaaggucaacaucuGGUGCAgGAGg -3'
miRNA:   3'- gCCCGCGCGUGCg--C-GU-------------CCACGUgCUC- -5'
23740 3' -62.2 NC_005261.1 + 22085 0.74 0.221984
Target:  5'- aGGGgGCGC-CGCGUGGGgGCGgGAGg -3'
miRNA:   3'- gCCCgCGCGuGCGCGUCCaCGUgCUC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.