Results 101 - 120 of 305 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23740 | 3' | -62.2 | NC_005261.1 | + | 12311 | 0.72 | 0.273554 |
Target: 5'- aCGGGCGCGUagccggcgggcGCGCGCuuGGccgGCGCGGc -3' miRNA: 3'- -GCCCGCGCG-----------UGCGCGu-CCa--CGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 126949 | 0.72 | 0.273554 |
Target: 5'- gGGGCGC-CGgGCGCGGGggcggcaGCGCGAa -3' miRNA: 3'- gCCCGCGcGUgCGCGUCCa------CGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 46794 | 0.72 | 0.273554 |
Target: 5'- cCGGGCGCccgucgcgGCGCGCGCGGaugGCGCGc- -3' miRNA: 3'- -GCCCGCG--------CGUGCGCGUCca-CGUGCuc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 105866 | 0.72 | 0.279843 |
Target: 5'- uCGGcGaUGCGguUGgGCAGGUGCACGAu -3' miRNA: 3'- -GCC-C-GCGCguGCgCGUCCACGUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 60001 | 0.72 | 0.279843 |
Target: 5'- uCGGGCaGCGCgACGgGCAGG-GaCACGAa -3' miRNA: 3'- -GCCCG-CGCG-UGCgCGUCCaC-GUGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 32912 | 0.73 | 0.243805 |
Target: 5'- gGGGCGCGCguggggggcgGCGgGCGGGggggGgGCGGGg -3' miRNA: 3'- gCCCGCGCG----------UGCgCGUCCa---CgUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 93759 | 0.73 | 0.238187 |
Target: 5'- gCGGcccGCGCGCGCGCggcgucgcaGCAGGUGCcccCGGGa -3' miRNA: 3'- -GCC---CGCGCGUGCG---------CGUCCACGu--GCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 95671 | 0.74 | 0.216794 |
Target: 5'- aCGGGCGCgggugugaGCACGUGCAcGaGCGCGAGu -3' miRNA: 3'- -GCCCGCG--------CGUGCGCGUcCaCGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 108177 | 0.74 | 0.216794 |
Target: 5'- aGGGCGCGCGgcCGCgGCuccGG-GCGCGAGa -3' miRNA: 3'- gCCCGCGCGU--GCG-CGu--CCaCGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 107258 | 0.74 | 0.216794 |
Target: 5'- gCGGGCGCGCgggcACGgGCGGGcGCGCa-- -3' miRNA: 3'- -GCCCGCGCG----UGCgCGUCCaCGUGcuc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 18979 | 0.74 | 0.22146 |
Target: 5'- gGGGCGCGCACGaaaGuCAaaggucaacaucuGGUGCAgGAGg -3' miRNA: 3'- gCCCGCGCGUGCg--C-GU-------------CCACGUgCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 22085 | 0.74 | 0.221984 |
Target: 5'- aGGGgGCGC-CGCGUGGGgGCGgGAGg -3' miRNA: 3'- gCCCgCGCGuGCGCGUCCaCGUgCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 49470 | 0.74 | 0.221984 |
Target: 5'- gCGGGCGCGCAggcCGCGCGGaagcUGCAgcaGAGg -3' miRNA: 3'- -GCCCGCGCGU---GCGCGUCc---ACGUg--CUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 53077 | 0.74 | 0.221984 |
Target: 5'- gGGGCgGCGCACGgacCGCAGGaagGCACGcAGc -3' miRNA: 3'- gCCCG-CGCGUGC---GCGUCCa--CGUGC-UC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 116492 | 0.74 | 0.226744 |
Target: 5'- gCGGGCGCGCGguauaaagagcgcCGcCGCGGcG-GCGCGAGg -3' miRNA: 3'- -GCCCGCGCGU-------------GC-GCGUC-CaCGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 49031 | 0.74 | 0.227278 |
Target: 5'- gGcGGCGgGCACGCGCAGGcagccGC-CGAGc -3' miRNA: 3'- gC-CCGCgCGUGCGCGUCCa----CGuGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 1720 | 0.74 | 0.232679 |
Target: 5'- gCGcGGCG-GCACGgGCAccgcGGUGCGCGGGc -3' miRNA: 3'- -GC-CCGCgCGUGCgCGU----CCACGUGCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 38345 | 0.74 | 0.232679 |
Target: 5'- gGGGCGCGCACGCccaGCGGGccuuugggGCGgcCGGGa -3' miRNA: 3'- gCCCGCGCGUGCG---CGUCCa-------CGU--GCUC- -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 67111 | 0.74 | 0.232679 |
Target: 5'- gCGGGCG-GCGCGCGCA-GUGCgGCGGc -3' miRNA: 3'- -GCCCGCgCGUGCGCGUcCACG-UGCUc -5' |
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23740 | 3' | -62.2 | NC_005261.1 | + | 97634 | 0.74 | 0.232679 |
Target: 5'- gCGGGCGgaGCGgGCGCGGGUGC-CGc- -3' miRNA: 3'- -GCCCGCg-CGUgCGCGUCCACGuGCuc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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