miRNA display CGI


Results 21 - 40 of 305 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 3' -62.2 NC_005261.1 + 77262 0.66 0.611393
Target:  5'- aGGGCGCGCucGCGgGCGGcGUcuGCauugcgcuucccgucGCGAGc -3'
miRNA:   3'- gCCCGCGCG--UGCgCGUC-CA--CG---------------UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 15789 0.66 0.607451
Target:  5'- gCGGGCGcCGCcCGCGCGGccaGCGCc-- -3'
miRNA:   3'- -GCCCGC-GCGuGCGCGUCca-CGUGcuc -5'
23740 3' -62.2 NC_005261.1 + 455 0.66 0.607451
Target:  5'- aCGGGgGC-CGCGacggccgGCGGGaugGCGCGGGg -3'
miRNA:   3'- -GCCCgCGcGUGCg------CGUCCa--CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 18592 0.66 0.607451
Target:  5'- aGGGCGCaGC-CGUGCgAGGUGUcCGu- -3'
miRNA:   3'- gCCCGCG-CGuGCGCG-UCCACGuGCuc -5'
23740 3' -62.2 NC_005261.1 + 93343 0.66 0.607451
Target:  5'- cCGcGCGCaGCGCGCGCAGcgcgcgccaGUGCGCcGGc -3'
miRNA:   3'- -GCcCGCG-CGUGCGCGUC---------CACGUGcUC- -5'
23740 3' -62.2 NC_005261.1 + 103927 0.66 0.607451
Target:  5'- uCGGGCGCgGCgucugccagACGCuGCAGcG-GCGCGAc -3'
miRNA:   3'- -GCCCGCG-CG---------UGCG-CGUC-CaCGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 17481 0.66 0.607451
Target:  5'- gCGGGCGCGC-CG-GgGGGUccuagacgcggaGCAUGGGc -3'
miRNA:   3'- -GCCCGCGCGuGCgCgUCCA------------CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 128062 0.66 0.607451
Target:  5'- cCGGGCcaugGCGgGCGgGCGGGcGaGCGAGc -3'
miRNA:   3'- -GCCCG----CGCgUGCgCGUCCaCgUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 138126 0.66 0.607451
Target:  5'- aCGGGgGC-CGCGacggccgGCGGGaugGCGCGGGg -3'
miRNA:   3'- -GCCCgCGcGUGCg------CGUCCa--CGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 97850 0.66 0.607451
Target:  5'- gCGGGCGC-CGC-CGCGGcaGCGCGGc -3'
miRNA:   3'- -GCCCGCGcGUGcGCGUCcaCGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 124783 0.66 0.606466
Target:  5'- gCGGGgGCccuuccgacagccGCucguCGCGCucuAGGUGCGCGuAGg -3'
miRNA:   3'- -GCCCgCG-------------CGu---GCGCG---UCCACGUGC-UC- -5'
23740 3' -62.2 NC_005261.1 + 1889 0.66 0.606466
Target:  5'- aCGGcGCGCGCcaGCGCGCgccgcucAGGccagcGCGCGGc -3'
miRNA:   3'- -GCC-CGCGCG--UGCGCG-------UCCa----CGUGCUc -5'
23740 3' -62.2 NC_005261.1 + 118827 0.66 0.604496
Target:  5'- uGGGCGCgGCacugccgcucugcgGCGCGgAGGgcgGCGCGc- -3'
miRNA:   3'- gCCCGCG-CG--------------UGCGCgUCCa--CGUGCuc -5'
23740 3' -62.2 NC_005261.1 + 132898 0.66 0.597608
Target:  5'- cCGGGCGC-CGCGgGC-GGcGC-CGAGc -3'
miRNA:   3'- -GCCCGCGcGUGCgCGuCCaCGuGCUC- -5'
23740 3' -62.2 NC_005261.1 + 36981 0.66 0.597608
Target:  5'- uCGGuGCGgGCuccagccggaGCcCGCGGGcUGCGCGGGg -3'
miRNA:   3'- -GCC-CGCgCG----------UGcGCGUCC-ACGUGCUC- -5'
23740 3' -62.2 NC_005261.1 + 49092 0.66 0.597608
Target:  5'- gCGGGCccGCugaGCGCGCGCAGcaGCuccuCGAGc -3'
miRNA:   3'- -GCCCG--CG---CGUGCGCGUCcaCGu---GCUC- -5'
23740 3' -62.2 NC_005261.1 + 88376 0.66 0.597608
Target:  5'- aCGGcCGaGCGCGCGCccaAGGUGUaccucgacgGCGAGg -3'
miRNA:   3'- -GCCcGCgCGUGCGCG---UCCACG---------UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 132102 0.66 0.597608
Target:  5'- aGGGCGgcCGCgACGCGCucGUGgaGCGGGa -3'
miRNA:   3'- gCCCGC--GCG-UGCGCGucCACg-UGCUC- -5'
23740 3' -62.2 NC_005261.1 + 76079 0.66 0.597608
Target:  5'- gCGGGCuGCuGCGCcucgugGCGCuGGaGCugGAGa -3'
miRNA:   3'- -GCCCG-CG-CGUG------CGCGuCCaCGugCUC- -5'
23740 3' -62.2 NC_005261.1 + 44028 0.66 0.597608
Target:  5'- gCGGGCGgcCGC-CGCGCGGcG-GcCGCGGGc -3'
miRNA:   3'- -GCCCGC--GCGuGCGCGUC-CaC-GUGCUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.