miRNA display CGI


Results 21 - 40 of 93 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23740 5' -56.3 NC_005261.1 + 131480 0.66 0.865019
Target:  5'- -cCGCGa--GCGCGC-CGUCGACgCCu -3'
miRNA:   3'- aaGUGCaugUGCGCGaGCAGCUG-GGc -5'
23740 5' -56.3 NC_005261.1 + 118073 0.66 0.864267
Target:  5'- --aGCGgccGCAgcCGCGCUCGUcugcuggCGGCCCGc -3'
miRNA:   3'- aagUGCa--UGU--GCGCGAGCA-------GCUGGGC- -5'
23740 5' -56.3 NC_005261.1 + 96918 0.67 0.849576
Target:  5'- cUCGCGU----GUGCagGUCGACCCGa -3'
miRNA:   3'- aAGUGCAugugCGCGagCAGCUGGGC- -5'
23740 5' -56.3 NC_005261.1 + 86262 0.67 0.849576
Target:  5'- -gCGCGcACGCGUGCcggUCGUCGcgcgagcacaGCCCGc -3'
miRNA:   3'- aaGUGCaUGUGCGCG---AGCAGC----------UGGGC- -5'
23740 5' -56.3 NC_005261.1 + 17018 0.67 0.849576
Target:  5'- -gCACGcgGC-CGCGCUCGUCGcguagcgcACCuCGa -3'
miRNA:   3'- aaGUGCa-UGuGCGCGAGCAGC--------UGG-GC- -5'
23740 5' -56.3 NC_005261.1 + 115747 0.67 0.841556
Target:  5'- gUUCGCGcACACGU---CGUCGGCCCc -3'
miRNA:   3'- -AAGUGCaUGUGCGcgaGCAGCUGGGc -5'
23740 5' -56.3 NC_005261.1 + 3952 0.67 0.841556
Target:  5'- -gCGCGUACGCGCGC-CG-CaGGCUCu -3'
miRNA:   3'- aaGUGCAUGUGCGCGaGCaG-CUGGGc -5'
23740 5' -56.3 NC_005261.1 + 86071 0.67 0.836652
Target:  5'- -gUACGUGgccugcaugaugcucCGCGCGUucUCGUCGgcGCCCGg -3'
miRNA:   3'- aaGUGCAU---------------GUGCGCG--AGCAGC--UGGGC- -5'
23740 5' -56.3 NC_005261.1 + 119058 0.67 0.833346
Target:  5'- -cCGCGgcCGCGCGUgugcuuUCGU-GGCCCGg -3'
miRNA:   3'- aaGUGCauGUGCGCG------AGCAgCUGGGC- -5'
23740 5' -56.3 NC_005261.1 + 103480 0.67 0.833346
Target:  5'- --gGCGUccaGCugGCGCaagacgUCGUCGGCgCCGc -3'
miRNA:   3'- aagUGCA---UGugCGCG------AGCAGCUG-GGC- -5'
23740 5' -56.3 NC_005261.1 + 65943 0.67 0.833346
Target:  5'- -cCugGUACACGCGCUUcUCuagGGCCUc -3'
miRNA:   3'- aaGugCAUGUGCGCGAGcAG---CUGGGc -5'
23740 5' -56.3 NC_005261.1 + 32376 0.67 0.833346
Target:  5'- -gCugGUGCAgGCGCggcgCGgcggCGuCCCGg -3'
miRNA:   3'- aaGugCAUGUgCGCGa---GCa---GCuGGGC- -5'
23740 5' -56.3 NC_005261.1 + 31394 0.67 0.833346
Target:  5'- --gACGUGCGCGUggugguGCUCuaCGACCCGc -3'
miRNA:   3'- aagUGCAUGUGCG------CGAGcaGCUGGGC- -5'
23740 5' -56.3 NC_005261.1 + 64124 0.67 0.833346
Target:  5'- -gCACGUGC-CGCGCggccgccagcgCGUCcuGGCCCa -3'
miRNA:   3'- aaGUGCAUGuGCGCGa----------GCAG--CUGGGc -5'
23740 5' -56.3 NC_005261.1 + 62291 0.67 0.832515
Target:  5'- aUCACGUcggcgccGCGCGgGCgcgCGgCGGCCCc -3'
miRNA:   3'- aAGUGCA-------UGUGCgCGa--GCaGCUGGGc -5'
23740 5' -56.3 NC_005261.1 + 104739 0.67 0.824953
Target:  5'- -cCGCGUGCGCGCGC-CGUUcugcaccaggaaGGCCa- -3'
miRNA:   3'- aaGUGCAUGUGCGCGaGCAG------------CUGGgc -5'
23740 5' -56.3 NC_005261.1 + 99226 0.67 0.824953
Target:  5'- -cCGCG-GCAgGCGCgucggCGUCGcGCCCGc -3'
miRNA:   3'- aaGUGCaUGUgCGCGa----GCAGC-UGGGC- -5'
23740 5' -56.3 NC_005261.1 + 88485 0.68 0.816385
Target:  5'- -cCGCGccggaGCGCGCcgCGcUCGACCCGc -3'
miRNA:   3'- aaGUGCaug--UGCGCGa-GC-AGCUGGGC- -5'
23740 5' -56.3 NC_005261.1 + 69541 0.68 0.816385
Target:  5'- -gCugGcGCGCGCGCUgGggacggCGGCCCc -3'
miRNA:   3'- aaGugCaUGUGCGCGAgCa-----GCUGGGc -5'
23740 5' -56.3 NC_005261.1 + 21873 0.68 0.816385
Target:  5'- cUCGCGaACGCGCGCccgCGg-GGCCCc -3'
miRNA:   3'- aAGUGCaUGUGCGCGa--GCagCUGGGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.