Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23741 | 3' | -56.2 | NC_005261.1 | + | 58517 | 0.66 | 0.856952 |
Target: 5'- cGCGUCca-GGAGGCggaucgagcccaGCcgCCGCCCGGg -3' miRNA: 3'- aCGCAGucaCCUUCG------------UGa-GGUGGGUC- -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 137037 | 0.66 | 0.886555 |
Target: 5'- gGCGUCGGUGGAGgGCGgaCCGUCggCAGg -3' miRNA: 3'- aCGCAGUCACCUU-CGUgaGGUGG--GUC- -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 68736 | 0.66 | 0.886555 |
Target: 5'- gGCGcCGGcgGGAagaAGCGC-CCGCCgGGg -3' miRNA: 3'- aCGCaGUCa-CCU---UCGUGaGGUGGgUC- -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 1056 | 0.66 | 0.886555 |
Target: 5'- gGCGUUAGcggcgcgGGggGCugGCcCCGCuCCAGg -3' miRNA: 3'- aCGCAGUCa------CCuuCG--UGaGGUG-GGUC- -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 81860 | 0.66 | 0.879488 |
Target: 5'- aGCGU---UGGAAGuCGCUcaCCACCCAc -3' miRNA: 3'- aCGCAgucACCUUC-GUGA--GGUGGGUc -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 68616 | 0.66 | 0.879488 |
Target: 5'- gGCGUgGGggaGGAuGCGCgcCCGCCCGc -3' miRNA: 3'- aCGCAgUCa--CCUuCGUGa-GGUGGGUc -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 61591 | 0.66 | 0.886555 |
Target: 5'- cGUGUUcGUGGGcAGC-CUCCcGCCCAc -3' miRNA: 3'- aCGCAGuCACCU-UCGuGAGG-UGGGUc -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 64338 | 0.66 | 0.872194 |
Target: 5'- cGCGUCAG-GGcccGC-CUCCACCa-- -3' miRNA: 3'- aCGCAGUCaCCuu-CGuGAGGUGGguc -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 84 | 0.66 | 0.864681 |
Target: 5'- gGCGg-GGUGcGggGCGCgCC-CCCGGg -3' miRNA: 3'- aCGCagUCAC-CuuCGUGaGGuGGGUC- -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 9629 | 0.66 | 0.856952 |
Target: 5'- gGCGggGGUGGggGCugggugggcgggGC-CCACUCGGg -3' miRNA: 3'- aCGCagUCACCuuCG------------UGaGGUGGGUC- -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 31424 | 0.66 | 0.871453 |
Target: 5'- cUGCc-CGG-GGAGGCGCUggcggcgCCGCCCGGc -3' miRNA: 3'- -ACGcaGUCaCCUUCGUGA-------GGUGGGUC- -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 137767 | 0.66 | 0.864681 |
Target: 5'- gGCGg-GGUGcGggGCGCgCC-CCCGGg -3' miRNA: 3'- aCGCagUCAC-CuuCGUGaGGuGGGUC- -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 93468 | 0.66 | 0.872194 |
Target: 5'- aGCG-CGGUGccGggGCGCgcgUCGCCCGc -3' miRNA: 3'- aCGCaGUCAC--CuuCGUGa--GGUGGGUc -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 51008 | 0.67 | 0.797429 |
Target: 5'- gGCG-CGGcGGGAGCucgGCgagcgCCACCCGGc -3' miRNA: 3'- aCGCaGUCaCCUUCG---UGa----GGUGGGUC- -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 44205 | 0.67 | 0.840878 |
Target: 5'- cGCGagcugCAGgcggcccGGGAGCGCgcgcugcuggCCGCCCAGc -3' miRNA: 3'- aCGCa----GUCa------CCUUCGUGa---------GGUGGGUC- -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 105309 | 0.67 | 0.815328 |
Target: 5'- aGCG-CGG-GGuccucGCACUCCGCCCc- -3' miRNA: 3'- aCGCaGUCaCCuu---CGUGAGGUGGGuc -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 23290 | 0.67 | 0.806459 |
Target: 5'- cGCGUCcGUGG--GCACagCACCCGu -3' miRNA: 3'- aCGCAGuCACCuuCGUGagGUGGGUc -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 30788 | 0.68 | 0.75406 |
Target: 5'- cGCGgCGGUGGAGGUGCUggggCCggaggagcuggggggGCCCGGg -3' miRNA: 3'- aCGCaGUCACCUUCGUGA----GG---------------UGGGUC- -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 59467 | 0.68 | 0.777978 |
Target: 5'- gGCGUCGGgGGGcagcgccGGCGCggccgCCGCgCCAGc -3' miRNA: 3'- aCGCAGUCaCCU-------UCGUGa----GGUG-GGUC- -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 75208 | 0.68 | 0.759869 |
Target: 5'- gGCGgccgCGGUGGcGGCGCUgCAgUCCAGc -3' miRNA: 3'- aCGCa---GUCACCuUCGUGAgGU-GGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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