Results 21 - 33 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23741 | 3' | -56.2 | NC_005261.1 | + | 74451 | 0.71 | 0.617783 |
Target: 5'- gGCGgggGGUGGggGCGCcgCC-CCCGGc -3' miRNA: 3'- aCGCag-UCACCuuCGUGa-GGuGGGUC- -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 75208 | 0.68 | 0.759869 |
Target: 5'- gGCGgccgCGGUGGcGGCGCUgCAgUCCAGc -3' miRNA: 3'- aCGCa---GUCACCuUCGUGAgGU-GGGUC- -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 81860 | 0.66 | 0.879488 |
Target: 5'- aGCGU---UGGAAGuCGCUcaCCACCCAc -3' miRNA: 3'- aCGCAgucACCUUC-GUGA--GGUGGGUc -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 83512 | 0.73 | 0.496401 |
Target: 5'- cGCGcCGGUGGAAGCGgcacgcgccCUCCAgcCCCAu -3' miRNA: 3'- aCGCaGUCACCUUCGU---------GAGGU--GGGUc -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 83744 | 0.7 | 0.638499 |
Target: 5'- gGCGUCgaGGUGGcGGCGCgCCACggCCGGg -3' miRNA: 3'- aCGCAG--UCACCuUCGUGaGGUG--GGUC- -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 87559 | 0.68 | 0.750166 |
Target: 5'- gGCGUCAGcuUGGccgucAGCcccGCgCCGCCCAGg -3' miRNA: 3'- aCGCAGUC--ACCu----UCG---UGaGGUGGGUC- -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 93468 | 0.66 | 0.872194 |
Target: 5'- aGCG-CGGUGccGggGCGCgcgUCGCCCGc -3' miRNA: 3'- aCGCaGUCAC--CuuCGUGa--GGUGGGUc -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 100046 | 0.72 | 0.516023 |
Target: 5'- gGCGUCAGcucGAGCGCgccgccgCCGCCCGGg -3' miRNA: 3'- aCGCAGUCaccUUCGUGa------GGUGGGUC- -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 105309 | 0.67 | 0.815328 |
Target: 5'- aGCG-CGG-GGuccucGCACUCCGCCCc- -3' miRNA: 3'- aCGCaGUCaCCuu---CGUGAGGUGGGuc -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 106946 | 0.68 | 0.788246 |
Target: 5'- cGCGcaccUCGGcccGGgcGCGCUCCGCCuCGGc -3' miRNA: 3'- aCGC----AGUCa--CCuuCGUGAGGUGG-GUC- -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 107281 | 0.72 | 0.546016 |
Target: 5'- cGCGcaUCAGgcGGcAGGCACUCCGCCgCGGc -3' miRNA: 3'- aCGC--AGUCa-CC-UUCGUGAGGUGG-GUC- -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 137037 | 0.66 | 0.886555 |
Target: 5'- gGCGUCGGUGGAGgGCGgaCCGUCggCAGg -3' miRNA: 3'- aCGCAGUCACCUU-CGUgaGGUGG--GUC- -5' |
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23741 | 3' | -56.2 | NC_005261.1 | + | 137767 | 0.66 | 0.864681 |
Target: 5'- gGCGg-GGUGcGggGCGCgCC-CCCGGg -3' miRNA: 3'- aCGCagUCAC-CuuCGUGaGGuGGGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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