miRNA display CGI


Results 1 - 20 of 181 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 3' -46.2 NC_005261.1 + 46085 0.66 0.999955
Target:  5'- -uGGCCGG--ACACGAGCacgUACgGCCg -3'
miRNA:   3'- uuUUGGUCcaUGUGCUUGaa-AUG-CGG- -5'
23742 3' -46.2 NC_005261.1 + 11091 0.66 0.999955
Target:  5'- cGGGACgGGGcgggACGCGAcgggACgagaUGCGCCg -3'
miRNA:   3'- -UUUUGgUCCa---UGUGCU----UGaa--AUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 74987 0.66 0.999955
Target:  5'- --cGCCGGGUGCAgaucgccaaGAACgaccCGCCc -3'
miRNA:   3'- uuuUGGUCCAUGUg--------CUUGaaauGCGG- -5'
23742 3' -46.2 NC_005261.1 + 90299 0.66 0.999955
Target:  5'- -cGACCccgucauGGUGCugGA-CUUUGCcaGCCu -3'
miRNA:   3'- uuUUGGu------CCAUGugCUuGAAAUG--CGG- -5'
23742 3' -46.2 NC_005261.1 + 133853 0.66 0.99994
Target:  5'- -uGGCCGGcGcGCGCGA-CUgccGCGCCu -3'
miRNA:   3'- uuUUGGUC-CaUGUGCUuGAaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 53894 0.66 0.99994
Target:  5'- cGAAgCGGGcccgcuuCGCGAGCg--GCGCCc -3'
miRNA:   3'- uUUUgGUCCau-----GUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 77764 0.66 0.99994
Target:  5'- -cAGCCGGGgcgGCGgGGACgacgAgGCCu -3'
miRNA:   3'- uuUUGGUCCa--UGUgCUUGaaa-UgCGG- -5'
23742 3' -46.2 NC_005261.1 + 44300 0.66 0.99994
Target:  5'- cGGGCCAGGgcCGCugcccGCgg-GCGCCg -3'
miRNA:   3'- uUUUGGUCCauGUGcu---UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 68792 0.66 0.99994
Target:  5'- -cGugCAGGUGCggcucaucccGCGGACccacaACGCCu -3'
miRNA:   3'- uuUugGUCCAUG----------UGCUUGaaa--UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 72017 0.66 0.99994
Target:  5'- --cGCCGGGg--GCGAcGCUgcGCGCCc -3'
miRNA:   3'- uuuUGGUCCaugUGCU-UGAaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 59067 0.66 0.99994
Target:  5'- -cGGCCGcGGagaGCGCGcGCgggUGCGCCg -3'
miRNA:   3'- uuUUGGU-CCa--UGUGCuUGaa-AUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 123926 0.66 0.99994
Target:  5'- -cGAgCAGGUGCGCGcccGCUagaUACaGCCa -3'
miRNA:   3'- uuUUgGUCCAUGUGCu--UGAa--AUG-CGG- -5'
23742 3' -46.2 NC_005261.1 + 108195 0.66 0.99994
Target:  5'- ---uCCGGGcGCGaGAGCU--GCGCCa -3'
miRNA:   3'- uuuuGGUCCaUGUgCUUGAaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 70476 0.66 0.999938
Target:  5'- --cGCCgcGGGUGCGCGcgcgugagcacguAGCUggcguucgGCGCCa -3'
miRNA:   3'- uuuUGG--UCCAUGUGC-------------UUGAaa------UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 109669 0.66 0.999934
Target:  5'- cGAGCgCGGGUGCugaGCGGACgagggacgauggccGCGCCu -3'
miRNA:   3'- uUUUG-GUCCAUG---UGCUUGaaa-----------UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 77452 0.66 0.999919
Target:  5'- -cAGCCAGGcccgggGCGCG-GCUgcagccGCGCCc -3'
miRNA:   3'- uuUUGGUCCa-----UGUGCuUGAaa----UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 59325 0.66 0.999919
Target:  5'- -cGGCCAGcGUGCGCGcccGCcggguCGCCg -3'
miRNA:   3'- uuUUGGUC-CAUGUGCu--UGaaau-GCGG- -5'
23742 3' -46.2 NC_005261.1 + 1309 0.66 0.999919
Target:  5'- --cGCCGGcGgcgGCACGcGCUccgggACGCCg -3'
miRNA:   3'- uuuUGGUC-Ca--UGUGCuUGAaa---UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 54690 0.66 0.999919
Target:  5'- ---uCCAGGUGCGCGAggccGCagcuCGCg -3'
miRNA:   3'- uuuuGGUCCAUGUGCU----UGaaauGCGg -5'
23742 3' -46.2 NC_005261.1 + 118366 0.66 0.999905
Target:  5'- -cGGCCGGGcGCugGGGCgcgcggcccgagGCGCUg -3'
miRNA:   3'- uuUUGGUCCaUGugCUUGaaa---------UGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.