miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 3' -46.2 NC_005261.1 + 54690 0.66 0.999919
Target:  5'- ---uCCAGGUGCGCGAggccGCagcuCGCg -3'
miRNA:   3'- uuuuGGUCCAUGUGCU----UGaaauGCGg -5'
23742 3' -46.2 NC_005261.1 + 133853 0.66 0.99994
Target:  5'- -uGGCCGGcGcGCGCGA-CUgccGCGCCu -3'
miRNA:   3'- uuUUGGUC-CaUGUGCUuGAaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 47983 0.66 0.99986
Target:  5'- -cGACCAGG---GCGAACacgGCGUCg -3'
miRNA:   3'- uuUUGGUCCaugUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 72927 0.66 0.99986
Target:  5'- cAAACaGGGUGuCGCGcAGCgccgGCGCCg -3'
miRNA:   3'- uUUUGgUCCAU-GUGC-UUGaaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 77452 0.66 0.999919
Target:  5'- -cAGCCAGGcccgggGCGCG-GCUgcagccGCGCCc -3'
miRNA:   3'- uuUUGGUCCa-----UGUGCuUGAaa----UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 59067 0.66 0.99994
Target:  5'- -cGGCCGcGGagaGCGCGcGCgggUGCGCCg -3'
miRNA:   3'- uuUUGGU-CCa--UGUGCuUGaa-AUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 109669 0.66 0.999934
Target:  5'- cGAGCgCGGGUGCugaGCGGACgagggacgauggccGCGCCu -3'
miRNA:   3'- uUUUG-GUCCAUG---UGCUUGaaa-----------UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 46085 0.66 0.999955
Target:  5'- -uGGCCGG--ACACGAGCacgUACgGCCg -3'
miRNA:   3'- uuUUGGUCcaUGUGCUUGaa-AUG-CGG- -5'
23742 3' -46.2 NC_005261.1 + 90299 0.66 0.999955
Target:  5'- -cGACCccgucauGGUGCugGA-CUUUGCcaGCCu -3'
miRNA:   3'- uuUUGGu------CCAUGugCUuGAAAUG--CGG- -5'
23742 3' -46.2 NC_005261.1 + 53894 0.66 0.99994
Target:  5'- cGAAgCGGGcccgcuuCGCGAGCg--GCGCCc -3'
miRNA:   3'- uUUUgGUCCau-----GUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 94161 0.66 0.999893
Target:  5'- ---cCCGGGU-CGCGAAg---GCGCCc -3'
miRNA:   3'- uuuuGGUCCAuGUGCUUgaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 101956 0.66 0.99986
Target:  5'- cGAGCCGGG-GCACGGccGCcagguCGCCc -3'
miRNA:   3'- uUUUGGUCCaUGUGCU--UGaaau-GCGG- -5'
23742 3' -46.2 NC_005261.1 + 68792 0.66 0.99994
Target:  5'- -cGugCAGGUGCggcucaucccGCGGACccacaACGCCu -3'
miRNA:   3'- uuUugGUCCAUG----------UGCUUGaaa--UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 123926 0.66 0.99994
Target:  5'- -cGAgCAGGUGCGCGcccGCUagaUACaGCCa -3'
miRNA:   3'- uuUUgGUCCAUGUGCu--UGAa--AUG-CGG- -5'
23742 3' -46.2 NC_005261.1 + 77764 0.66 0.99994
Target:  5'- -cAGCCGGGgcgGCGgGGACgacgAgGCCu -3'
miRNA:   3'- uuUUGGUCCa--UGUgCUUGaaa-UgCGG- -5'
23742 3' -46.2 NC_005261.1 + 95640 0.66 0.99986
Target:  5'- -cGGCUGGGcgaGCGCGAcGCgcgGCGCCg -3'
miRNA:   3'- uuUUGGUCCa--UGUGCU-UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 29916 0.67 0.999818
Target:  5'- -cGAgCGGcUGCGCGAGCUggcggACGCUg -3'
miRNA:   3'- uuUUgGUCcAUGUGCUUGAaa---UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 109874 0.67 0.999818
Target:  5'- -cAGCgGGGccCGCGGGCgg-GCGCCc -3'
miRNA:   3'- uuUUGgUCCauGUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 3369 0.67 0.999516
Target:  5'- ---uUCAGGgcCGCGAGCgcggcCGCCa -3'
miRNA:   3'- uuuuGGUCCauGUGCUUGaaau-GCGG- -5'
23742 3' -46.2 NC_005261.1 + 29492 0.67 0.999516
Target:  5'- uGGACCuGGUguACGCGcGCcgcgACGCCa -3'
miRNA:   3'- uUUUGGuCCA--UGUGCuUGaaa-UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.