miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 3' -46.2 NC_005261.1 + 33051 0.67 0.999617
Target:  5'- gAGGGCCAGGacucgGCGCcggGGACgcgGCGCUg -3'
miRNA:   3'- -UUUUGGUCCa----UGUG---CUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 34454 0.67 0.999617
Target:  5'- --cGCCGGG-GCACGGGCcggGgGCCc -3'
miRNA:   3'- uuuUGGUCCaUGUGCUUGaaaUgCGG- -5'
23742 3' -46.2 NC_005261.1 + 54363 0.67 0.99974
Target:  5'- ---cCCAGGUcCGCGGGCagcggcucgggGCGCCc -3'
miRNA:   3'- uuuuGGUCCAuGUGCUUGaaa--------UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 65940 0.67 0.999617
Target:  5'- -uGGCCuGGUACACGcGCUUcucuaGgGCCu -3'
miRNA:   3'- uuUUGGuCCAUGUGCuUGAAa----UgCGG- -5'
23742 3' -46.2 NC_005261.1 + 72894 0.67 0.999699
Target:  5'- --cGCCGGGguagagcuCGCGGcACUUgaGCGCCg -3'
miRNA:   3'- uuuUGGUCCau------GUGCU-UGAAa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 121361 0.67 0.999699
Target:  5'- --cGCaCAGGUuCGCGuACUgcagGCGCCc -3'
miRNA:   3'- uuuUG-GUCCAuGUGCuUGAaa--UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 80104 0.67 0.999516
Target:  5'- --cGCCGcGGUAC-CG-GCUUggGCGCCg -3'
miRNA:   3'- uuuUGGU-CCAUGuGCuUGAAa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 29492 0.67 0.999516
Target:  5'- uGGACCuGGUguACGCGcGCcgcgACGCCa -3'
miRNA:   3'- uUUUGGuCCA--UGUGCuUGaaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 62194 0.67 0.999691
Target:  5'- gAAGACCaugugcagcgcgaGGGUGCGCGcggccGCgucUGCGCCc -3'
miRNA:   3'- -UUUUGG-------------UCCAUGUGCu----UGaa-AUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 109874 0.67 0.999818
Target:  5'- -cAGCgGGGccCGCGGGCgg-GCGCCc -3'
miRNA:   3'- uuUUGgUCCauGUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 53930 0.67 0.999699
Target:  5'- -uGACCAca-GCACGAGCgcggcGCGCCg -3'
miRNA:   3'- uuUUGGUccaUGUGCUUGaaa--UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 66145 0.67 0.999798
Target:  5'- --cACCAGGUucagccccgagauCAUGAACUcgccgUACGUCa -3'
miRNA:   3'- uuuUGGUCCAu------------GUGCUUGAa----AUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 92145 0.67 0.999818
Target:  5'- uGGGCCAGG-ACcucgGCGAGCgc-GCGCUc -3'
miRNA:   3'- uUUUGGUCCaUG----UGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 50091 0.67 0.999818
Target:  5'- -uGACCAcGUGCACGcuGCcc-GCGCCg -3'
miRNA:   3'- uuUUGGUcCAUGUGCu-UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 29916 0.67 0.999818
Target:  5'- -cGAgCGGcUGCGCGAGCUggcggACGCUg -3'
miRNA:   3'- uuUUgGUCcAUGUGCUUGAaa---UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 8150 0.67 0.999699
Target:  5'- cGGGCCGGGgucgauUGCugGGACggaucgauCGCCg -3'
miRNA:   3'- uUUUGGUCC------AUGugCUUGaaau----GCGG- -5'
23742 3' -46.2 NC_005261.1 + 63941 0.67 0.999617
Target:  5'- cGAAGcCCGGGUGCagccccguGCGcAGCUggUGCGUCa -3'
miRNA:   3'- -UUUU-GGUCCAUG--------UGC-UUGAa-AUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 62899 0.67 0.999699
Target:  5'- cGAGGCgGGGcgGgGCGGACgc-GCGCCc -3'
miRNA:   3'- -UUUUGgUCCa-UgUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 9178 0.67 0.999699
Target:  5'- -cGGCCAGGUACGUGGGCggggACaCCu -3'
miRNA:   3'- uuUUGGUCCAUGUGCUUGaaa-UGcGG- -5'
23742 3' -46.2 NC_005261.1 + 59029 0.67 0.999668
Target:  5'- --cGCCAGGaacgggugccgccGCGCGAGCUcaGCGCg -3'
miRNA:   3'- uuuUGGUCCa------------UGUGCUUGAaaUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.