miRNA display CGI


Results 61 - 80 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 3' -46.2 NC_005261.1 + 29492 0.67 0.999516
Target:  5'- uGGACCuGGUguACGCGcGCcgcgACGCCa -3'
miRNA:   3'- uUUUGGuCCA--UGUGCuUGaaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 3369 0.67 0.999516
Target:  5'- ---uUCAGGgcCGCGAGCgcggcCGCCa -3'
miRNA:   3'- uuuuGGUCCauGUGCUUGaaau-GCGG- -5'
23742 3' -46.2 NC_005261.1 + 123414 0.67 0.999516
Target:  5'- -cGGCCAGGg--GCGGGCU---CGCCa -3'
miRNA:   3'- uuUUGGUCCaugUGCUUGAaauGCGG- -5'
23742 3' -46.2 NC_005261.1 + 65940 0.67 0.999617
Target:  5'- -uGGCCuGGUACACGcGCUUcucuaGgGCCu -3'
miRNA:   3'- uuUUGGuCCAUGUGCuUGAAa----UgCGG- -5'
23742 3' -46.2 NC_005261.1 + 68685 0.67 0.999617
Target:  5'- --cGCCgcgugGGGgccgGCGCGGACgacggcgGCGCCg -3'
miRNA:   3'- uuuUGG-----UCCa---UGUGCUUGaaa----UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 112090 0.67 0.999617
Target:  5'- --cGCCAcguGGUGCGCGGugUUcaACGCg -3'
miRNA:   3'- uuuUGGU---CCAUGUGCUugAAa-UGCGg -5'
23742 3' -46.2 NC_005261.1 + 72894 0.67 0.999699
Target:  5'- --cGCCGGGguagagcuCGCGGcACUUgaGCGCCg -3'
miRNA:   3'- uuuUGGUCCau------GUGCU-UGAAa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 121647 0.67 0.999699
Target:  5'- --cGCCGGcGaGCGCGGGCUguccGCGUCg -3'
miRNA:   3'- uuuUGGUC-CaUGUGCUUGAaa--UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 54363 0.67 0.99974
Target:  5'- ---cCCAGGUcCGCGGGCagcggcucgggGCGCCc -3'
miRNA:   3'- uuuuGGUCCAuGUGCUUGaaa--------UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 62899 0.67 0.999699
Target:  5'- cGAGGCgGGGcgGgGCGGACgc-GCGCCc -3'
miRNA:   3'- -UUUUGgUCCa-UgUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 53930 0.67 0.999699
Target:  5'- -uGACCAca-GCACGAGCgcggcGCGCCg -3'
miRNA:   3'- uuUUGGUccaUGUGCUUGaaa--UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 8150 0.67 0.999699
Target:  5'- cGGGCCGGGgucgauUGCugGGACggaucgauCGCCg -3'
miRNA:   3'- uUUUGGUCC------AUGugCUUGaaau----GCGG- -5'
23742 3' -46.2 NC_005261.1 + 131715 0.67 0.999691
Target:  5'- gAGAGCCAggcggcgcgcuucGGUgggugcugcACGCGGACggcACGCCg -3'
miRNA:   3'- -UUUUGGU-------------CCA---------UGUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 134610 0.67 0.999617
Target:  5'- --cGCCGGGUcuggUGCGAACgcgGCGUCg -3'
miRNA:   3'- uuuUGGUCCAu---GUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 121361 0.67 0.999699
Target:  5'- --cGCaCAGGUuCGCGuACUgcagGCGCCc -3'
miRNA:   3'- uuuUG-GUCCAuGUGCuUGAaa--UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 440 0.68 0.999393
Target:  5'- cGGACCGGG-ACGgGGACgg-GgGCCg -3'
miRNA:   3'- uUUUGGUCCaUGUgCUUGaaaUgCGG- -5'
23742 3' -46.2 NC_005261.1 + 59913 0.68 0.999063
Target:  5'- gAAGAgCAGGUcgACGAGCU---CGCCg -3'
miRNA:   3'- -UUUUgGUCCAugUGCUUGAaauGCGG- -5'
23742 3' -46.2 NC_005261.1 + 17541 0.68 0.999243
Target:  5'- cAAACUGGGcgGCGCGGGCc---CGCCg -3'
miRNA:   3'- uUUUGGUCCa-UGUGCUUGaaauGCGG- -5'
23742 3' -46.2 NC_005261.1 + 87012 0.68 0.999063
Target:  5'- gAAGGCCAaGUGCGCGGccccgcGCGCCa -3'
miRNA:   3'- -UUUUGGUcCAUGUGCUugaaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 34359 0.68 0.999243
Target:  5'- cGGGGCCGGGcGC-CGcGCg--GCGCCg -3'
miRNA:   3'- -UUUUGGUCCaUGuGCuUGaaaUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.