Results 81 - 100 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23742 | 3' | -46.2 | NC_005261.1 | + | 34359 | 0.68 | 0.999243 |
Target: 5'- cGGGGCCGGGcGC-CGcGCg--GCGCCg -3' miRNA: 3'- -UUUUGGUCCaUGuGCuUGaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 58488 | 0.68 | 0.999243 |
Target: 5'- cAGGCC-GGcGCGCGGccGCUUUugGCGCCc -3' miRNA: 3'- uUUUGGuCCaUGUGCU--UGAAA--UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 17464 | 0.68 | 0.999243 |
Target: 5'- gGAAACUgcGGGcagACGCGGGC---GCGCCg -3' miRNA: 3'- -UUUUGG--UCCa--UGUGCUUGaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 9135 | 0.68 | 0.999379 |
Target: 5'- uGGGGgCGGGUGCAggcaaauCGGGCUgggaccugGCGCCg -3' miRNA: 3'- -UUUUgGUCCAUGU-------GCUUGAaa------UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 18865 | 0.68 | 0.999393 |
Target: 5'- uGGAugCAGGgcuUGCAgGAGCcc-GCGCCu -3' miRNA: 3'- -UUUugGUCC---AUGUgCUUGaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 32354 | 0.68 | 0.999393 |
Target: 5'- cGGACCAGGgccCGCGGGag--ACGCUg -3' miRNA: 3'- uUUUGGUCCau-GUGCUUgaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 72701 | 0.68 | 0.999393 |
Target: 5'- --cGCCAGGUcCGCcAGCgucGCGCCc -3' miRNA: 3'- uuuUGGUCCAuGUGcUUGaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 28574 | 0.68 | 0.999121 |
Target: 5'- cGGGCCgAGGcGCGCGAGCgccggcgggccgcccGCGCCg -3' miRNA: 3'- uUUUGG-UCCaUGUGCUUGaaa------------UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 87012 | 0.68 | 0.999063 |
Target: 5'- gAAGGCCAaGUGCGCGGccccgcGCGCCa -3' miRNA: 3'- -UUUUGGUcCAUGUGCUugaaa-UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 92809 | 0.68 | 0.999393 |
Target: 5'- --cGCCGGGcGCGCGGGCgugggaccGCGCg -3' miRNA: 3'- uuuUGGUCCaUGUGCUUGaaa-----UGCGg -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 49773 | 0.68 | 0.999393 |
Target: 5'- uAGAUCAGc-ACGCGGACgucGCGCCa -3' miRNA: 3'- uUUUGGUCcaUGUGCUUGaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 78834 | 0.68 | 0.998848 |
Target: 5'- gGGAGCUGcGGUACGCcGGCg--GCGCCc -3' miRNA: 3'- -UUUUGGU-CCAUGUGcUUGaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 45880 | 0.68 | 0.999063 |
Target: 5'- -cGGCCAGGUcguACuCGAACUcuguugGCGCUc -3' miRNA: 3'- uuUUGGUCCA---UGuGCUUGAaa----UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 61972 | 0.68 | 0.999063 |
Target: 5'- -cAGCCGGGUcGC-CGAGCUgauccaggcCGCCa -3' miRNA: 3'- uuUUGGUCCA-UGuGCUUGAaau------GCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 67879 | 0.68 | 0.999063 |
Target: 5'- ---cCCGGGcgGCGCGggUaa-GCGCCg -3' miRNA: 3'- uuuuGGUCCa-UGUGCuuGaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 83767 | 0.68 | 0.999063 |
Target: 5'- -cGGCCGGGUcGCAgcgccCGAGCa--GCGCCa -3' miRNA: 3'- uuUUGGUCCA-UGU-----GCUUGaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 85100 | 0.68 | 0.999063 |
Target: 5'- --cACCAGGUugGCcAugUaaaacUGCGCCa -3' miRNA: 3'- uuuUGGUCCAugUGcUugAa----AUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 50436 | 0.68 | 0.999063 |
Target: 5'- -cGugCAGcGUGCGCGugaAGCU--GCGCCg -3' miRNA: 3'- uuUugGUC-CAUGUGC---UUGAaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 59913 | 0.68 | 0.999063 |
Target: 5'- gAAGAgCAGGUcgACGAGCU---CGCCg -3' miRNA: 3'- -UUUUgGUCCAugUGCUUGAaauGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 38950 | 0.68 | 0.999063 |
Target: 5'- cGGGCCGcGGcGCGCGGGCU--GCGCa -3' miRNA: 3'- uUUUGGU-CCaUGUGCUUGAaaUGCGg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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