Results 41 - 60 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position |
R_P_ratio![]() |
P value |
Predicted miRNA align pattern | |||||||
23742 | 3' | -46.2 | NC_005261.1 | + | 13038 | 0.71 | 0.988169 |
Target: 5'- cGAGCCAGG-GCGCGGggccGCgc-GCGCCc -3' miRNA: 3'- uUUUGGUCCaUGUGCU----UGaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 105382 | 0.7 | 0.995827 |
Target: 5'- --cGCgCGGGUGCGCGcuGACcacGCGCCg -3' miRNA: 3'- uuuUG-GUCCAUGUGC--UUGaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 76072 | 0.7 | 0.996471 |
Target: 5'- --cACCAGG---GCGGGCUgcUGCGCCu -3' miRNA: 3'- uuuUGGUCCaugUGCUUGAa-AUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 29091 | 0.7 | 0.996471 |
Target: 5'- gGGGGCCGGGgacuCGgGGACcg-ACGCCg -3' miRNA: 3'- -UUUUGGUCCau--GUgCUUGaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 73081 | 0.7 | 0.996471 |
Target: 5'- --cGCCAGGaGCGCGuagGCgUUGCGCa -3' miRNA: 3'- uuuUGGUCCaUGUGCu--UGaAAUGCGg -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 83410 | 0.7 | 0.996471 |
Target: 5'- -cGAgCAGGUGCGCGAAgUUga-GCUg -3' miRNA: 3'- uuUUgGUCCAUGUGCUUgAAaugCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 94561 | 0.7 | 0.996471 |
Target: 5'- --cGCCGGGUcgaACGCG-ACguaggggGCGCCg -3' miRNA: 3'- uuuUGGUCCA---UGUGCuUGaaa----UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 58050 | 0.7 | 0.995827 |
Target: 5'- -cGGCCgcgugauguagaGGGUgACGCGGACggcgGCGCCa -3' miRNA: 3'- uuUUGG------------UCCA-UGUGCUUGaaa-UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 23179 | 0.7 | 0.995827 |
Target: 5'- --cGCCGGGggcgACAgCGAGC---GCGCCg -3' miRNA: 3'- uuuUGGUCCa---UGU-GCUUGaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 72492 | 0.7 | 0.995827 |
Target: 5'- --cGCCAGGagcgccGCGCGAaGCgg-GCGCCg -3' miRNA: 3'- uuuUGGUCCa-----UGUGCU-UGaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 29799 | 0.7 | 0.993299 |
Target: 5'- gGAGGCCGGcGccggcgGCGCGGGCgcccGCGCCg -3' miRNA: 3'- -UUUUGGUC-Ca-----UGUGCUUGaaa-UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 126764 | 0.7 | 0.994251 |
Target: 5'- --cGCCAGGUACAUGGcgcccACUaccGCGUCu -3' miRNA: 3'- uuuUGGUCCAUGUGCU-----UGAaa-UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 19507 | 0.7 | 0.99509 |
Target: 5'- gGAGugCAGGUACGCGAggccccgcagcACggcccGCGUCa -3' miRNA: 3'- -UUUugGUCCAUGUGCU-----------UGaaa--UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 32282 | 0.7 | 0.99509 |
Target: 5'- --cGCCGcuGGUGCugGAgGCgg-GCGCCg -3' miRNA: 3'- uuuUGGU--CCAUGugCU-UGaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 31562 | 0.7 | 0.995827 |
Target: 5'- uGGGCCGGGUccuGgACGGGC---GCGCCg -3' miRNA: 3'- uUUUGGUCCA---UgUGCUUGaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 42182 | 0.7 | 0.995827 |
Target: 5'- uGGACgCAGG-GCGCGAGCcgcuccacgGCGCCg -3' miRNA: 3'- uUUUG-GUCCaUGUGCUUGaaa------UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 125809 | 0.69 | 0.997031 |
Target: 5'- uGGGCCGGGgccgcCGCGAGCg--GgGCCg -3' miRNA: 3'- uUUUGGUCCau---GUGCUUGaaaUgCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 80747 | 0.69 | 0.997031 |
Target: 5'- ----aCGGGUACAcCGAGC---GCGCCu -3' miRNA: 3'- uuuugGUCCAUGU-GCUUGaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 125754 | 0.69 | 0.997515 |
Target: 5'- cGGGGCCAGGgcugcCGCGGGCUcgGCuaagGCCa -3' miRNA: 3'- -UUUUGGUCCau---GUGCUUGAaaUG----CGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 110682 | 0.69 | 0.997515 |
Target: 5'- --cGCCuGGaGCACGAggGCUUccGCGCCc -3' miRNA: 3'- uuuUGGuCCaUGUGCU--UGAAa-UGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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