miRNA display CGI


Results 61 - 80 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 3' -46.2 NC_005261.1 + 93666 0.69 0.998288
Target:  5'- --cACC-GGUcCGCGGGCggcgGCGCCg -3'
miRNA:   3'- uuuUGGuCCAuGUGCUUGaaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 70915 0.69 0.998591
Target:  5'- --cGCCAcGUcccGCGCGAGCUccaGCGCCu -3'
miRNA:   3'- uuuUGGUcCA---UGUGCUUGAaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 91538 0.69 0.997932
Target:  5'- gAGGAcCCGGGcUACGCGcGCgcccGCGCCg -3'
miRNA:   3'- -UUUU-GGUCC-AUGUGCuUGaaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 87933 0.69 0.997932
Target:  5'- ---cCCGGGgcCugGAGCcgcGCGCCg -3'
miRNA:   3'- uuuuGGUCCauGugCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 54818 0.69 0.997932
Target:  5'- --cACCAGGUccgcgucauACGCGGgcagggcuaGCUgccgGCGCCg -3'
miRNA:   3'- uuuUGGUCCA---------UGUGCU---------UGAaa--UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 68401 0.69 0.997031
Target:  5'- -cGACCGGGUAcCACGAcaccgaGCg--GCGCg -3'
miRNA:   3'- uuUUGGUCCAU-GUGCU------UGaaaUGCGg -5'
23742 3' -46.2 NC_005261.1 + 125809 0.69 0.997031
Target:  5'- uGGGCCGGGgccgcCGCGAGCg--GgGCCg -3'
miRNA:   3'- uUUUGGUCCau---GUGCUUGaaaUgCGG- -5'
23742 3' -46.2 NC_005261.1 + 80747 0.69 0.997031
Target:  5'- ----aCGGGUACAcCGAGC---GCGCCu -3'
miRNA:   3'- uuuugGUCCAUGU-GCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 125754 0.69 0.997515
Target:  5'- cGGGGCCAGGgcugcCGCGGGCUcgGCuaagGCCa -3'
miRNA:   3'- -UUUUGGUCCau---GUGCUUGAaaUG----CGG- -5'
23742 3' -46.2 NC_005261.1 + 110682 0.69 0.997515
Target:  5'- --cGCCuGGaGCACGAggGCUUccGCGCCc -3'
miRNA:   3'- uuuUGGuCCaUGUGCU--UGAAa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 1956 0.69 0.997932
Target:  5'- --cGCgCAGGUACACG-----UGCGCCu -3'
miRNA:   3'- uuuUG-GUCCAUGUGCuugaaAUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 45880 0.68 0.999063
Target:  5'- -cGGCCAGGUcguACuCGAACUcuguugGCGCUc -3'
miRNA:   3'- uuUUGGUCCA---UGuGCUUGAaa----UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 78834 0.68 0.998848
Target:  5'- gGGAGCUGcGGUACGCcGGCg--GCGCCc -3'
miRNA:   3'- -UUUUGGU-CCAUGUGcUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 47073 0.68 0.998848
Target:  5'- --cGCguGGUACGCGuGC---ACGCCg -3'
miRNA:   3'- uuuUGguCCAUGUGCuUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 125873 0.68 0.998848
Target:  5'- -cGGCCGGGgcgGCGCccuuGGCUgaagGCGCCu -3'
miRNA:   3'- uuUUGGUCCa--UGUGc---UUGAaa--UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 78632 0.68 0.998848
Target:  5'- --cGCCAGGUccgccgaguucGCGCGAGCga---GCCc -3'
miRNA:   3'- uuuUGGUCCA-----------UGUGCUUGaaaugCGG- -5'
23742 3' -46.2 NC_005261.1 + 70575 0.68 0.998848
Target:  5'- aAGAGCUcGG-GCGCGAGCgcagcggcgUGCGCCc -3'
miRNA:   3'- -UUUUGGuCCaUGUGCUUGaa-------AUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 70355 0.68 0.998848
Target:  5'- gGGGACCGGGaggcgGCGCGccuccACg--GCGCCg -3'
miRNA:   3'- -UUUUGGUCCa----UGUGCu----UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 20329 0.68 0.998848
Target:  5'- cGAGCCGc--GCACGAGCg--ACGCCc -3'
miRNA:   3'- uUUUGGUccaUGUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 61972 0.68 0.999063
Target:  5'- -cAGCCGGGUcGC-CGAGCUgauccaggcCGCCa -3'
miRNA:   3'- uuUUGGUCCA-UGuGCUUGAaau------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.