miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 3' -46.2 NC_005261.1 + 88173 0.72 0.977991
Target:  5'- cGGGCCGGGgcgACGCcGGCg--GCGCCg -3'
miRNA:   3'- uUUUGGUCCa--UGUGcUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 59234 0.72 0.977991
Target:  5'- --cGCCGGGc-CACGAGCgagagcggGCGCCg -3'
miRNA:   3'- uuuUGGUCCauGUGCUUGaaa-----UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 49063 0.72 0.977991
Target:  5'- -cGGCCAGGUuCGCGaAGCgggcacGCGCCg -3'
miRNA:   3'- uuUUGGUCCAuGUGC-UUGaaa---UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 2088 0.72 0.977991
Target:  5'- gAAGGCCAGGUcccgcguCGCGAGCagcagcACGCCc -3'
miRNA:   3'- -UUUUGGUCCAu------GUGCUUGaaa---UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 64482 0.72 0.980417
Target:  5'- --cGCCGGGUGCAgCGggUg--GCGCg -3'
miRNA:   3'- uuuUGGUCCAUGU-GCuuGaaaUGCGg -5'
23742 3' -46.2 NC_005261.1 + 74667 0.72 0.980417
Target:  5'- cAGGCCGGGgACGCGGACgcgaccGCGCg -3'
miRNA:   3'- uUUUGGUCCaUGUGCUUGaaa---UGCGg -5'
23742 3' -46.2 NC_005261.1 + 91185 0.72 0.982637
Target:  5'- --cGCCGGGcuuCGCGcGCUUcgGCGCCg -3'
miRNA:   3'- uuuUGGUCCau-GUGCuUGAAa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 31002 0.72 0.984663
Target:  5'- -cGGCCGGGgcCAgGGGCccgGCGCCg -3'
miRNA:   3'- uuUUGGUCCauGUgCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 1735 0.72 0.986503
Target:  5'- --cACCGcGGUGCGCGGGCccagGCGCg -3'
miRNA:   3'- uuuUGGU-CCAUGUGCUUGaaa-UGCGg -5'
23742 3' -46.2 NC_005261.1 + 13038 0.71 0.988169
Target:  5'- cGAGCCAGG-GCGCGGggccGCgc-GCGCCc -3'
miRNA:   3'- uUUUGGUCCaUGUGCU----UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 71496 0.71 0.989089
Target:  5'- -cGGCCAGGUGCgcgcgaaagucgGCGGGCUcguccgcguacgACGCCa -3'
miRNA:   3'- uuUUGGUCCAUG------------UGCUUGAaa----------UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 46473 0.71 0.989671
Target:  5'- cGAAGCgCAGGUGCA---GCUcgGCGCCc -3'
miRNA:   3'- -UUUUG-GUCCAUGUgcuUGAaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 74519 0.71 0.989671
Target:  5'- --cGCCGGGgcCAUGGcGCUUggGCGCCu -3'
miRNA:   3'- uuuUGGUCCauGUGCU-UGAAa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 2493 0.71 0.989671
Target:  5'- gAAGAgCGGGUGgucCGCGAGCc--GCGCCg -3'
miRNA:   3'- -UUUUgGUCCAU---GUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 60323 0.71 0.991019
Target:  5'- -cGAUCAGGUGgACGAcgguguuuGCg--GCGCCg -3'
miRNA:   3'- uuUUGGUCCAUgUGCU--------UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 98190 0.71 0.991019
Target:  5'- --cGCCGGGgGCGCGGcgggcaGCgg-GCGCCg -3'
miRNA:   3'- uuuUGGUCCaUGUGCU------UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 21027 0.71 0.992225
Target:  5'- cGAGCCcuGGGgGCGCGcACcgUGCGCCa -3'
miRNA:   3'- uUUUGG--UCCaUGUGCuUGaaAUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 34410 0.71 0.992225
Target:  5'- -cGACCGGGUgGCGCGcGGCcc-GCGCCu -3'
miRNA:   3'- uuUUGGUCCA-UGUGC-UUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 39790 0.71 0.992225
Target:  5'- --cGCCGGGgggcgGCGCGGccGCcg-GCGCCa -3'
miRNA:   3'- uuuUGGUCCa----UGUGCU--UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 55963 0.71 0.992225
Target:  5'- --cGCCGGGUcuccCGCGAGCgc--CGCCg -3'
miRNA:   3'- uuuUGGUCCAu---GUGCUUGaaauGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.