miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 3' -46.2 NC_005261.1 + 4178 0.71 0.992225
Target:  5'- ---uCCGGGccCGCGAGCUUcGCGCUc -3'
miRNA:   3'- uuuuGGUCCauGUGCUUGAAaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 29799 0.7 0.993299
Target:  5'- gGAGGCCGGcGccggcgGCGCGGGCgcccGCGCCg -3'
miRNA:   3'- -UUUUGGUC-Ca-----UGUGCUUGaaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 126764 0.7 0.994251
Target:  5'- --cGCCAGGUACAUGGcgcccACUaccGCGUCu -3'
miRNA:   3'- uuuUGGUCCAUGUGCU-----UGAaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 19507 0.7 0.99509
Target:  5'- gGAGugCAGGUACGCGAggccccgcagcACggcccGCGUCa -3'
miRNA:   3'- -UUUugGUCCAUGUGCU-----------UGaaa--UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 32282 0.7 0.99509
Target:  5'- --cGCCGcuGGUGCugGAgGCgg-GCGCCg -3'
miRNA:   3'- uuuUGGU--CCAUGugCU-UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 105382 0.7 0.995827
Target:  5'- --cGCgCGGGUGCGCGcuGACcacGCGCCg -3'
miRNA:   3'- uuuUG-GUCCAUGUGC--UUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 58050 0.7 0.995827
Target:  5'- -cGGCCgcgugauguagaGGGUgACGCGGACggcgGCGCCa -3'
miRNA:   3'- uuUUGG------------UCCA-UGUGCUUGaaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 23179 0.7 0.995827
Target:  5'- --cGCCGGGggcgACAgCGAGC---GCGCCg -3'
miRNA:   3'- uuuUGGUCCa---UGU-GCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 72492 0.7 0.995827
Target:  5'- --cGCCAGGagcgccGCGCGAaGCgg-GCGCCg -3'
miRNA:   3'- uuuUGGUCCa-----UGUGCU-UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 42182 0.7 0.995827
Target:  5'- uGGACgCAGG-GCGCGAGCcgcuccacgGCGCCg -3'
miRNA:   3'- uUUUG-GUCCaUGUGCUUGaaa------UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 31562 0.7 0.995827
Target:  5'- uGGGCCGGGUccuGgACGGGC---GCGCCg -3'
miRNA:   3'- uUUUGGUCCA---UgUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 94561 0.7 0.996471
Target:  5'- --cGCCGGGUcgaACGCG-ACguaggggGCGCCg -3'
miRNA:   3'- uuuUGGUCCA---UGUGCuUGaaa----UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 83410 0.7 0.996471
Target:  5'- -cGAgCAGGUGCGCGAAgUUga-GCUg -3'
miRNA:   3'- uuUUgGUCCAUGUGCUUgAAaugCGG- -5'
23742 3' -46.2 NC_005261.1 + 73081 0.7 0.996471
Target:  5'- --cGCCAGGaGCGCGuagGCgUUGCGCa -3'
miRNA:   3'- uuuUGGUCCaUGUGCu--UGaAAUGCGg -5'
23742 3' -46.2 NC_005261.1 + 29091 0.7 0.996471
Target:  5'- gGGGGCCGGGgacuCGgGGACcg-ACGCCg -3'
miRNA:   3'- -UUUUGGUCCau--GUgCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 76072 0.7 0.996471
Target:  5'- --cACCAGG---GCGGGCUgcUGCGCCu -3'
miRNA:   3'- uuuUGGUCCaugUGCUUGAa-AUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 68401 0.69 0.997031
Target:  5'- -cGACCGGGUAcCACGAcaccgaGCg--GCGCg -3'
miRNA:   3'- uuUUGGUCCAU-GUGCU------UGaaaUGCGg -5'
23742 3' -46.2 NC_005261.1 + 125809 0.69 0.997031
Target:  5'- uGGGCCGGGgccgcCGCGAGCg--GgGCCg -3'
miRNA:   3'- uUUUGGUCCau---GUGCUUGaaaUgCGG- -5'
23742 3' -46.2 NC_005261.1 + 80747 0.69 0.997031
Target:  5'- ----aCGGGUACAcCGAGC---GCGCCu -3'
miRNA:   3'- uuuugGUCCAUGU-GCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 110682 0.69 0.997515
Target:  5'- --cGCCuGGaGCACGAggGCUUccGCGCCc -3'
miRNA:   3'- uuuUGGuCCaUGUGCU--UGAAa-UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.