miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 3' -46.2 NC_005261.1 + 98355 0.66 0.999893
Target:  5'- gGGGGCgGGGguggGCGCGGGCUcuggcggGCGCa -3'
miRNA:   3'- -UUUUGgUCCa---UGUGCUUGAaa-----UGCGg -5'
23742 3' -46.2 NC_005261.1 + 94161 0.66 0.999893
Target:  5'- ---cCCGGGU-CGCGAAg---GCGCCc -3'
miRNA:   3'- uuuuGGUCCAuGUGCUUgaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 66340 0.66 0.999874
Target:  5'- --cACgAGGUcugcgaucuuggccaGCGCGAGCUc-GCGCCc -3'
miRNA:   3'- uuuUGgUCCA---------------UGUGCUUGAaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 95768 0.66 0.99986
Target:  5'- --cGCCGGGagccuCGCGcGCU--GCGCCg -3'
miRNA:   3'- uuuUGGUCCau---GUGCuUGAaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 9638 0.66 0.99986
Target:  5'- gGGGGCUGGGUGgGCGGggcccacucggGCgg-GCGCCc -3'
miRNA:   3'- -UUUUGGUCCAUgUGCU-----------UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 101956 0.66 0.99986
Target:  5'- cGAGCCGGG-GCACGGccGCcagguCGCCc -3'
miRNA:   3'- uUUUGGUCCaUGUGCU--UGaaau-GCGG- -5'
23742 3' -46.2 NC_005261.1 + 127625 0.66 0.99986
Target:  5'- -cGGCCGGccggACGCGAcgGCggcgGCGCCg -3'
miRNA:   3'- uuUUGGUCca--UGUGCU--UGaaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 72927 0.66 0.99986
Target:  5'- cAAACaGGGUGuCGCGcAGCgccgGCGCCg -3'
miRNA:   3'- uUUUGgUCCAU-GUGC-UUGaaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 102761 0.66 0.99986
Target:  5'- --uGCCGcGG-ACGCGAGC---GCGCCc -3'
miRNA:   3'- uuuUGGU-CCaUGUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 71205 0.66 0.99986
Target:  5'- -cGGCCAGcUGCGCGAugg-UGCGCg -3'
miRNA:   3'- uuUUGGUCcAUGUGCUugaaAUGCGg -5'
23742 3' -46.2 NC_005261.1 + 95640 0.66 0.99986
Target:  5'- -cGGCUGGGcgaGCGCGAcGCgcgGCGCCg -3'
miRNA:   3'- uuUUGGUCCa--UGUGCU-UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 3936 0.66 0.99986
Target:  5'- ---uCCGGGUAggcCAUGGGCgcgUACGCg -3'
miRNA:   3'- uuuuGGUCCAU---GUGCUUGaa-AUGCGg -5'
23742 3' -46.2 NC_005261.1 + 62428 0.66 0.99986
Target:  5'- cGAGGCCA---GCGCGAGCcgguCGCCg -3'
miRNA:   3'- -UUUUGGUccaUGUGCUUGaaauGCGG- -5'
23742 3' -46.2 NC_005261.1 + 47983 0.66 0.99986
Target:  5'- -cGACCAGG---GCGAACacgGCGUCg -3'
miRNA:   3'- uuUUGGUCCaugUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 80867 0.66 0.99986
Target:  5'- ---cCCAGGcgcgcucagccGCGCGGGCUUcagcgGCGCCu -3'
miRNA:   3'- uuuuGGUCCa----------UGUGCUUGAAa----UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 56345 0.66 0.99986
Target:  5'- cGAGGCCGGGUuaaauaccgGCACcGGCgagGCGCa -3'
miRNA:   3'- -UUUUGGUCCA---------UGUGcUUGaaaUGCGg -5'
23742 3' -46.2 NC_005261.1 + 29916 0.67 0.999818
Target:  5'- -cGAgCGGcUGCGCGAGCUggcggACGCUg -3'
miRNA:   3'- uuUUgGUCcAUGUGCUUGAaa---UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 38239 0.67 0.999818
Target:  5'- cGGAGCgGGGcGC-CGGGCUcgcACGCCa -3'
miRNA:   3'- -UUUUGgUCCaUGuGCUUGAaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 31427 0.67 0.999818
Target:  5'- ---cCCGGGgagGCGCuGGCg--GCGCCg -3'
miRNA:   3'- uuuuGGUCCa--UGUGcUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 50091 0.67 0.999818
Target:  5'- -uGACCAcGUGCACGcuGCcc-GCGCCg -3'
miRNA:   3'- uuUUGGUcCAUGUGCu-UGaaaUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.