Results 41 - 60 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
23742 | 3' | -46.2 | NC_005261.1 | + | 38239 | 0.67 | 0.999818 |
Target: 5'- cGGAGCgGGGcGC-CGGGCUcgcACGCCa -3' miRNA: 3'- -UUUUGgUCCaUGuGCUUGAaa-UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 29916 | 0.67 | 0.999818 |
Target: 5'- -cGAgCGGcUGCGCGAGCUggcggACGCUg -3' miRNA: 3'- uuUUgGUCcAUGUGCUUGAaa---UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 73405 | 0.67 | 0.999818 |
Target: 5'- --cACCAGGUACggggccGCGAACc--GgGCCu -3' miRNA: 3'- uuuUGGUCCAUG------UGCUUGaaaUgCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 66145 | 0.67 | 0.999798 |
Target: 5'- --cACCAGGUucagccccgagauCAUGAACUcgccgUACGUCa -3' miRNA: 3'- uuuUGGUCCAu------------GUGCUUGAa----AUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 5115 | 0.67 | 0.999765 |
Target: 5'- --cGCCAGcucgGCGCGGGCggccCGCCg -3' miRNA: 3'- uuuUGGUCca--UGUGCUUGaaauGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 121693 | 0.67 | 0.999765 |
Target: 5'- ---uCCAGGUugcGCAUGGagGCguagACGCCg -3' miRNA: 3'- uuuuGGUCCA---UGUGCU--UGaaa-UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 37431 | 0.67 | 0.999765 |
Target: 5'- --cGCCGuGGcGCGCGGGCU---CGCCg -3' miRNA: 3'- uuuUGGU-CCaUGUGCUUGAaauGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 75604 | 0.67 | 0.999765 |
Target: 5'- --cGCCGcGG-ACGCGGACg--GCGUCg -3' miRNA: 3'- uuuUGGU-CCaUGUGCUUGaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 80074 | 0.67 | 0.999765 |
Target: 5'- gGGGGCguGGgggACGCGGACcg-GCGCg -3' miRNA: 3'- -UUUUGguCCa--UGUGCUUGaaaUGCGg -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 14367 | 0.67 | 0.999765 |
Target: 5'- -cGGCCGGGgcgGCGCGGugGCccgcauCGCCa -3' miRNA: 3'- uuUUGGUCCa--UGUGCU--UGaaau--GCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 54363 | 0.67 | 0.99974 |
Target: 5'- ---cCCAGGUcCGCGGGCagcggcucgggGCGCCc -3' miRNA: 3'- uuuuGGUCCAuGUGCUUGaaa--------UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 9178 | 0.67 | 0.999699 |
Target: 5'- -cGGCCAGGUACGUGGGCggggACaCCu -3' miRNA: 3'- uuUUGGUCCAUGUGCUUGaaa-UGcGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 8150 | 0.67 | 0.999699 |
Target: 5'- cGGGCCGGGgucgauUGCugGGACggaucgauCGCCg -3' miRNA: 3'- uUUUGGUCC------AUGugCUUGaaau----GCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 53930 | 0.67 | 0.999699 |
Target: 5'- -uGACCAca-GCACGAGCgcggcGCGCCg -3' miRNA: 3'- uuUUGGUccaUGUGCUUGaaa--UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 62899 | 0.67 | 0.999699 |
Target: 5'- cGAGGCgGGGcgGgGCGGACgc-GCGCCc -3' miRNA: 3'- -UUUUGgUCCa-UgUGCUUGaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 121647 | 0.67 | 0.999699 |
Target: 5'- --cGCCGGcGaGCGCGGGCUguccGCGUCg -3' miRNA: 3'- uuuUGGUC-CaUGUGCUUGAaa--UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 72894 | 0.67 | 0.999699 |
Target: 5'- --cGCCGGGguagagcuCGCGGcACUUgaGCGCCg -3' miRNA: 3'- uuuUGGUCCau------GUGCU-UGAAa-UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 121361 | 0.67 | 0.999699 |
Target: 5'- --cGCaCAGGUuCGCGuACUgcagGCGCCc -3' miRNA: 3'- uuuUG-GUCCAuGUGCuUGAaa--UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 131715 | 0.67 | 0.999691 |
Target: 5'- gAGAGCCAggcggcgcgcuucGGUgggugcugcACGCGGACggcACGCCg -3' miRNA: 3'- -UUUUGGU-------------CCA---------UGUGCUUGaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 62194 | 0.67 | 0.999691 |
Target: 5'- gAAGACCaugugcagcgcgaGGGUGCGCGcggccGCgucUGCGCCc -3' miRNA: 3'- -UUUUGG-------------UCCAUGUGCu----UGaa-AUGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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