miRNA display CGI


Results 61 - 80 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 3' -46.2 NC_005261.1 + 59029 0.67 0.999668
Target:  5'- --cGCCAGGaacgggugccgccGCGCGAGCUcaGCGCg -3'
miRNA:   3'- uuuUGGUCCa------------UGUGCUUGAaaUGCGg -5'
23742 3' -46.2 NC_005261.1 + 134610 0.67 0.999617
Target:  5'- --cGCCGGGUcuggUGCGAACgcgGCGUCg -3'
miRNA:   3'- uuuUGGUCCAu---GUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 63941 0.67 0.999617
Target:  5'- cGAAGcCCGGGUGCagccccguGCGcAGCUggUGCGUCa -3'
miRNA:   3'- -UUUU-GGUCCAUG--------UGC-UUGAa-AUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 103920 0.67 0.999617
Target:  5'- --cGCCAGGUcggGCGCGGcguCUgccagACGCUg -3'
miRNA:   3'- uuuUGGUCCA---UGUGCUu--GAaa---UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 3623 0.67 0.999617
Target:  5'- --uGCCcGGaGCACGcGCUccgggUGCGCCg -3'
miRNA:   3'- uuuUGGuCCaUGUGCuUGAa----AUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 68685 0.67 0.999617
Target:  5'- --cGCCgcgugGGGgccgGCGCGGACgacggcgGCGCCg -3'
miRNA:   3'- uuuUGG-----UCCa---UGUGCUUGaaa----UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 112090 0.67 0.999617
Target:  5'- --cGCCAcguGGUGCGCGGugUUcaACGCg -3'
miRNA:   3'- uuuUGGU---CCAUGUGCUugAAa-UGCGg -5'
23742 3' -46.2 NC_005261.1 + 117067 0.67 0.999617
Target:  5'- -cAGCCuGGUuaaGCACGAGCUcgGCGa- -3'
miRNA:   3'- uuUUGGuCCA---UGUGCUUGAaaUGCgg -5'
23742 3' -46.2 NC_005261.1 + 33051 0.67 0.999617
Target:  5'- gAGGGCCAGGacucgGCGCcggGGACgcgGCGCUg -3'
miRNA:   3'- -UUUUGGUCCa----UGUG---CUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 65940 0.67 0.999617
Target:  5'- -uGGCCuGGUACACGcGCUUcucuaGgGCCu -3'
miRNA:   3'- uuUUGGuCCAUGUGCuUGAAa----UgCGG- -5'
23742 3' -46.2 NC_005261.1 + 34454 0.67 0.999617
Target:  5'- --cGCCGGG-GCACGGGCcggGgGCCc -3'
miRNA:   3'- uuuUGGUCCaUGUGCUUGaaaUgCGG- -5'
23742 3' -46.2 NC_005261.1 + 123414 0.67 0.999516
Target:  5'- -cGGCCAGGg--GCGGGCU---CGCCa -3'
miRNA:   3'- uuUUGGUCCaugUGCUUGAaauGCGG- -5'
23742 3' -46.2 NC_005261.1 + 3369 0.67 0.999516
Target:  5'- ---uUCAGGgcCGCGAGCgcggcCGCCa -3'
miRNA:   3'- uuuuGGUCCauGUGCUUGaaau-GCGG- -5'
23742 3' -46.2 NC_005261.1 + 29492 0.67 0.999516
Target:  5'- uGGACCuGGUguACGCGcGCcgcgACGCCa -3'
miRNA:   3'- uUUUGGuCCA--UGUGCuUGaaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 80104 0.67 0.999516
Target:  5'- --cGCCGcGGUAC-CG-GCUUggGCGCCg -3'
miRNA:   3'- uuuUGGU-CCAUGuGCuUGAAa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 138111 0.68 0.999393
Target:  5'- cGGACCGGG-ACGgGGACgg-GgGCCg -3'
miRNA:   3'- uUUUGGUCCaUGUgCUUGaaaUgCGG- -5'
23742 3' -46.2 NC_005261.1 + 92809 0.68 0.999393
Target:  5'- --cGCCGGGcGCGCGGGCgugggaccGCGCg -3'
miRNA:   3'- uuuUGGUCCaUGUGCUUGaaa-----UGCGg -5'
23742 3' -46.2 NC_005261.1 + 72701 0.68 0.999393
Target:  5'- --cGCCAGGUcCGCcAGCgucGCGCCc -3'
miRNA:   3'- uuuUGGUCCAuGUGcUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 32354 0.68 0.999393
Target:  5'- cGGACCAGGgccCGCGGGag--ACGCUg -3'
miRNA:   3'- uUUUGGUCCau-GUGCUUgaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 18865 0.68 0.999393
Target:  5'- uGGAugCAGGgcuUGCAgGAGCcc-GCGCCu -3'
miRNA:   3'- -UUUugGUCC---AUGUgCUUGaaaUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.