miRNA display CGI


Results 81 - 100 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 3' -46.2 NC_005261.1 + 92809 0.68 0.999393
Target:  5'- --cGCCGGGcGCGCGGGCgugggaccGCGCg -3'
miRNA:   3'- uuuUGGUCCaUGUGCUUGaaa-----UGCGg -5'
23742 3' -46.2 NC_005261.1 + 138111 0.68 0.999393
Target:  5'- cGGACCGGG-ACGgGGACgg-GgGCCg -3'
miRNA:   3'- uUUUGGUCCaUGUgCUUGaaaUgCGG- -5'
23742 3' -46.2 NC_005261.1 + 45112 0.68 0.999393
Target:  5'- uGGAGCCGGG--CACGGGC---GCGCUg -3'
miRNA:   3'- -UUUUGGUCCauGUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 9135 0.68 0.999379
Target:  5'- uGGGGgCGGGUGCAggcaaauCGGGCUgggaccugGCGCCg -3'
miRNA:   3'- -UUUUgGUCCAUGU-------GCUUGAaa------UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 3432 0.68 0.999243
Target:  5'- cGGGCCAGcGUccaggcgggcGCGCGGGCcgccGCGCCg -3'
miRNA:   3'- uUUUGGUC-CA----------UGUGCUUGaaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 113649 0.68 0.999243
Target:  5'- -cGACCAGGaGCGCcugaucGAcCUcUGCGCCg -3'
miRNA:   3'- uuUUGGUCCaUGUG------CUuGAaAUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 17541 0.68 0.999243
Target:  5'- cAAACUGGGcgGCGCGGGCc---CGCCg -3'
miRNA:   3'- uUUUGGUCCa-UGUGCUUGaaauGCGG- -5'
23742 3' -46.2 NC_005261.1 + 34359 0.68 0.999243
Target:  5'- cGGGGCCGGGcGC-CGcGCg--GCGCCg -3'
miRNA:   3'- -UUUUGGUCCaUGuGCuUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 58488 0.68 0.999243
Target:  5'- cAGGCC-GGcGCGCGGccGCUUUugGCGCCc -3'
miRNA:   3'- uUUUGGuCCaUGUGCU--UGAAA--UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 17464 0.68 0.999243
Target:  5'- gGAAACUgcGGGcagACGCGGGC---GCGCCg -3'
miRNA:   3'- -UUUUGG--UCCa--UGUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 54176 0.68 0.999243
Target:  5'- gAAGACCaAGGggaggaGCGCGcACcggUGCGCCa -3'
miRNA:   3'- -UUUUGG-UCCa-----UGUGCuUGaa-AUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 84532 0.68 0.999227
Target:  5'- ---uCCAGGUccaugugcuccacACGCGGGCccaGCGCCu -3'
miRNA:   3'- uuuuGGUCCA-------------UGUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 28574 0.68 0.999121
Target:  5'- cGGGCCgAGGcGCGCGAGCgccggcgggccgcccGCGCCg -3'
miRNA:   3'- uUUUGG-UCCaUGUGCUUGaaa------------UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 87012 0.68 0.999063
Target:  5'- gAAGGCCAaGUGCGCGGccccgcGCGCCa -3'
miRNA:   3'- -UUUUGGUcCAUGUGCUugaaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 38950 0.68 0.999063
Target:  5'- cGGGCCGcGGcGCGCGGGCU--GCGCa -3'
miRNA:   3'- uUUUGGU-CCaUGUGCUUGAaaUGCGg -5'
23742 3' -46.2 NC_005261.1 + 59913 0.68 0.999063
Target:  5'- gAAGAgCAGGUcgACGAGCU---CGCCg -3'
miRNA:   3'- -UUUUgGUCCAugUGCUUGAaauGCGG- -5'
23742 3' -46.2 NC_005261.1 + 50436 0.68 0.999063
Target:  5'- -cGugCAGcGUGCGCGugaAGCU--GCGCCg -3'
miRNA:   3'- uuUugGUC-CAUGUGC---UUGAaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 85100 0.68 0.999063
Target:  5'- --cACCAGGUugGCcAugUaaaacUGCGCCa -3'
miRNA:   3'- uuuUGGUCCAugUGcUugAa----AUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 83767 0.68 0.999063
Target:  5'- -cGGCCGGGUcGCAgcgccCGAGCa--GCGCCa -3'
miRNA:   3'- uuUUGGUCCA-UGU-----GCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 61972 0.68 0.999063
Target:  5'- -cAGCCGGGUcGC-CGAGCUgauccaggcCGCCa -3'
miRNA:   3'- uuUUGGUCCA-UGuGCUUGAaau------GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.