miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 3' -46.2 NC_005261.1 + 440 0.68 0.999393
Target:  5'- cGGACCGGG-ACGgGGACgg-GgGCCg -3'
miRNA:   3'- uUUUGGUCCaUGUgCUUGaaaUgCGG- -5'
23742 3' -46.2 NC_005261.1 + 1196 0.74 0.954518
Target:  5'- cGGGGCCGGGcgcgGCGCGGACccccCGCCg -3'
miRNA:   3'- -UUUUGGUCCa---UGUGCUUGaaauGCGG- -5'
23742 3' -46.2 NC_005261.1 + 1309 0.66 0.999919
Target:  5'- --cGCCGGcGgcgGCACGcGCUccgggACGCCg -3'
miRNA:   3'- uuuUGGUC-Ca--UGUGCuUGAaa---UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 1550 0.75 0.918131
Target:  5'- cAGGCCAGGUACAcCGGccgcaGCggcGCGCCg -3'
miRNA:   3'- uUUUGGUCCAUGU-GCU-----UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 1735 0.72 0.986503
Target:  5'- --cACCGcGGUGCGCGGGCccagGCGCg -3'
miRNA:   3'- uuuUGGU-CCAUGUGCUUGaaa-UGCGg -5'
23742 3' -46.2 NC_005261.1 + 1956 0.69 0.997932
Target:  5'- --cGCgCAGGUACACG-----UGCGCCu -3'
miRNA:   3'- uuuUG-GUCCAUGUGCuugaaAUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 2088 0.72 0.977991
Target:  5'- gAAGGCCAGGUcccgcguCGCGAGCagcagcACGCCc -3'
miRNA:   3'- -UUUUGGUCCAu------GUGCUUGaaa---UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 2493 0.71 0.989671
Target:  5'- gAAGAgCGGGUGgucCGCGAGCc--GCGCCg -3'
miRNA:   3'- -UUUUgGUCCAU---GUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 2680 0.75 0.935394
Target:  5'- gGGGACCcGGcgGCGCGccGGCUUUugGCCg -3'
miRNA:   3'- -UUUUGGuCCa-UGUGC--UUGAAAugCGG- -5'
23742 3' -46.2 NC_005261.1 + 3369 0.67 0.999516
Target:  5'- ---uUCAGGgcCGCGAGCgcggcCGCCa -3'
miRNA:   3'- uuuuGGUCCauGUGCUUGaaau-GCGG- -5'
23742 3' -46.2 NC_005261.1 + 3432 0.68 0.999243
Target:  5'- cGGGCCAGcGUccaggcgggcGCGCGGGCcgccGCGCCg -3'
miRNA:   3'- uUUUGGUC-CA----------UGUGCUUGaaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 3623 0.67 0.999617
Target:  5'- --uGCCcGGaGCACGcGCUccgggUGCGCCg -3'
miRNA:   3'- uuuUGGuCCaUGUGCuUGAa----AUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 3936 0.66 0.99986
Target:  5'- ---uCCGGGUAggcCAUGGGCgcgUACGCg -3'
miRNA:   3'- uuuuGGUCCAU---GUGCUUGaa-AUGCGg -5'
23742 3' -46.2 NC_005261.1 + 4178 0.71 0.992225
Target:  5'- ---uCCGGGccCGCGAGCUUcGCGCUc -3'
miRNA:   3'- uuuuGGUCCauGUGCUUGAAaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 5115 0.67 0.999765
Target:  5'- --cGCCAGcucgGCGCGGGCggccCGCCg -3'
miRNA:   3'- uuuUGGUCca--UGUGCUUGaaauGCGG- -5'
23742 3' -46.2 NC_005261.1 + 8150 0.67 0.999699
Target:  5'- cGGGCCGGGgucgauUGCugGGACggaucgauCGCCg -3'
miRNA:   3'- uUUUGGUCC------AUGugCUUGaaau----GCGG- -5'
23742 3' -46.2 NC_005261.1 + 9135 0.68 0.999379
Target:  5'- uGGGGgCGGGUGCAggcaaauCGGGCUgggaccugGCGCCg -3'
miRNA:   3'- -UUUUgGUCCAUGU-------GCUUGAaa------UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 9178 0.67 0.999699
Target:  5'- -cGGCCAGGUACGUGGGCggggACaCCu -3'
miRNA:   3'- uuUUGGUCCAUGUGCUUGaaa-UGcGG- -5'
23742 3' -46.2 NC_005261.1 + 9638 0.66 0.99986
Target:  5'- gGGGGCUGGGUGgGCGGggcccacucggGCgg-GCGCCc -3'
miRNA:   3'- -UUUUGGUCCAUgUGCU-----------UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 11091 0.66 0.999955
Target:  5'- cGGGACgGGGcgggACGCGAcgggACgagaUGCGCCg -3'
miRNA:   3'- -UUUUGgUCCa---UGUGCU----UGaa--AUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.