miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 3' -46.2 NC_005261.1 + 13038 0.71 0.988169
Target:  5'- cGAGCCAGG-GCGCGGggccGCgc-GCGCCc -3'
miRNA:   3'- uUUUGGUCCaUGUGCU----UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 13440 0.73 0.966051
Target:  5'- -cGACCGGGUGCAgGcaGGCcg-GCGCCu -3'
miRNA:   3'- uuUUGGUCCAUGUgC--UUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 14367 0.67 0.999765
Target:  5'- -cGGCCGGGgcgGCGCGGugGCccgcauCGCCa -3'
miRNA:   3'- uuUUGGUCCa--UGUGCU--UGaaau--GCGG- -5'
23742 3' -46.2 NC_005261.1 + 17464 0.68 0.999243
Target:  5'- gGAAACUgcGGGcagACGCGGGC---GCGCCg -3'
miRNA:   3'- -UUUUGG--UCCa--UGUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 17541 0.68 0.999243
Target:  5'- cAAACUGGGcgGCGCGGGCc---CGCCg -3'
miRNA:   3'- uUUUGGUCCa-UGUGCUUGaaauGCGG- -5'
23742 3' -46.2 NC_005261.1 + 18339 0.74 0.945506
Target:  5'- cAGGCCGGGgcgcaGCACGAGCg--ACGUCc -3'
miRNA:   3'- uUUUGGUCCa----UGUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 18865 0.68 0.999393
Target:  5'- uGGAugCAGGgcuUGCAgGAGCcc-GCGCCu -3'
miRNA:   3'- -UUUugGUCC---AUGUgCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 19507 0.7 0.99509
Target:  5'- gGAGugCAGGUACGCGAggccccgcagcACggcccGCGUCa -3'
miRNA:   3'- -UUUugGUCCAUGUGCU-----------UGaaa--UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 20329 0.68 0.998848
Target:  5'- cGAGCCGc--GCACGAGCg--ACGCCc -3'
miRNA:   3'- uUUUGGUccaUGUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 21027 0.71 0.992225
Target:  5'- cGAGCCcuGGGgGCGCGcACcgUGCGCCa -3'
miRNA:   3'- uUUUGG--UCCaUGUGCuUGaaAUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 23179 0.7 0.995827
Target:  5'- --cGCCGGGggcgACAgCGAGC---GCGCCg -3'
miRNA:   3'- uuuUGGUCCa---UGU-GCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 28574 0.68 0.999121
Target:  5'- cGGGCCgAGGcGCGCGAGCgccggcgggccgcccGCGCCg -3'
miRNA:   3'- uUUUGG-UCCaUGUGCUUGaaa------------UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 29091 0.7 0.996471
Target:  5'- gGGGGCCGGGgacuCGgGGACcg-ACGCCg -3'
miRNA:   3'- -UUUUGGUCCau--GUgCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 29492 0.67 0.999516
Target:  5'- uGGACCuGGUguACGCGcGCcgcgACGCCa -3'
miRNA:   3'- uUUUGGuCCA--UGUGCuUGaaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 29799 0.7 0.993299
Target:  5'- gGAGGCCGGcGccggcgGCGCGGGCgcccGCGCCg -3'
miRNA:   3'- -UUUUGGUC-Ca-----UGUGCUUGaaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 29916 0.67 0.999818
Target:  5'- -cGAgCGGcUGCGCGAGCUggcggACGCUg -3'
miRNA:   3'- uuUUgGUCcAUGUGCUUGAaa---UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 31002 0.72 0.984663
Target:  5'- -cGGCCGGGgcCAgGGGCccgGCGCCg -3'
miRNA:   3'- uuUUGGUCCauGUgCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 31427 0.67 0.999818
Target:  5'- ---cCCGGGgagGCGCuGGCg--GCGCCg -3'
miRNA:   3'- uuuuGGUCCa--UGUGcUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 31562 0.7 0.995827
Target:  5'- uGGGCCGGGUccuGgACGGGC---GCGCCg -3'
miRNA:   3'- uUUUGGUCCA---UgUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 32282 0.7 0.99509
Target:  5'- --cGCCGcuGGUGCugGAgGCgg-GCGCCg -3'
miRNA:   3'- uuuUGGU--CCAUGugCU-UGaaaUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.