miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 3' -46.2 NC_005261.1 + 32354 0.68 0.999393
Target:  5'- cGGACCAGGgccCGCGGGag--ACGCUg -3'
miRNA:   3'- uUUUGGUCCau-GUGCUUgaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 33051 0.67 0.999617
Target:  5'- gAGGGCCAGGacucgGCGCcggGGACgcgGCGCUg -3'
miRNA:   3'- -UUUUGGUCCa----UGUG---CUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 33826 0.73 0.975351
Target:  5'- -cGGCCGGGggGCGCGGGCccccugGCGCUg -3'
miRNA:   3'- uuUUGGUCCa-UGUGCUUGaaa---UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 34359 0.68 0.999243
Target:  5'- cGGGGCCGGGcGC-CGcGCg--GCGCCg -3'
miRNA:   3'- -UUUUGGUCCaUGuGCuUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 34410 0.71 0.992225
Target:  5'- -cGACCGGGUgGCGCGcGGCcc-GCGCCu -3'
miRNA:   3'- uuUUGGUCCA-UGUGC-UUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 34454 0.67 0.999617
Target:  5'- --cGCCGGG-GCACGGGCcggGgGCCc -3'
miRNA:   3'- uuuUGGUCCaUGUGCUUGaaaUgCGG- -5'
23742 3' -46.2 NC_005261.1 + 36642 0.72 0.977991
Target:  5'- cGAAGCC-GGcGCGCGGGCUUgGgGCCa -3'
miRNA:   3'- -UUUUGGuCCaUGUGCUUGAAaUgCGG- -5'
23742 3' -46.2 NC_005261.1 + 36776 0.69 0.998288
Target:  5'- --cGCCGGcccGUGCguuGCGccgaGACUUUGCGCCg -3'
miRNA:   3'- uuuUGGUC---CAUG---UGC----UUGAAAUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 37431 0.67 0.999765
Target:  5'- --cGCCGuGGcGCGCGGGCU---CGCCg -3'
miRNA:   3'- uuuUGGU-CCaUGUGCUUGAaauGCGG- -5'
23742 3' -46.2 NC_005261.1 + 38239 0.67 0.999818
Target:  5'- cGGAGCgGGGcGC-CGGGCUcgcACGCCa -3'
miRNA:   3'- -UUUUGgUCCaUGuGCUUGAaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 38950 0.68 0.999063
Target:  5'- cGGGCCGcGGcGCGCGGGCU--GCGCa -3'
miRNA:   3'- uUUUGGU-CCaUGUGCUUGAaaUGCGg -5'
23742 3' -46.2 NC_005261.1 + 39790 0.71 0.992225
Target:  5'- --cGCCGGGgggcgGCGCGGccGCcg-GCGCCa -3'
miRNA:   3'- uuuUGGUCCa----UGUGCU--UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 42182 0.7 0.995827
Target:  5'- uGGACgCAGG-GCGCGAGCcgcuccacgGCGCCg -3'
miRNA:   3'- uUUUG-GUCCaUGUGCUUGaaa------UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 44195 0.69 0.998288
Target:  5'- --cGCCAGcGaGCGCGAGCUgcagGCgGCCc -3'
miRNA:   3'- uuuUGGUC-CaUGUGCUUGAaa--UG-CGG- -5'
23742 3' -46.2 NC_005261.1 + 44300 0.66 0.99994
Target:  5'- cGGGCCAGGgcCGCugcccGCgg-GCGCCg -3'
miRNA:   3'- uUUUGGUCCauGUGcu---UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 44897 0.77 0.883811
Target:  5'- -uGGCCGGGgcgUACACGGACcc-ACGCCg -3'
miRNA:   3'- uuUUGGUCC---AUGUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 45112 0.68 0.999393
Target:  5'- uGGAGCCGGG--CACGGGC---GCGCUg -3'
miRNA:   3'- -UUUUGGUCCauGUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 45880 0.68 0.999063
Target:  5'- -cGGCCAGGUcguACuCGAACUcuguugGCGCUc -3'
miRNA:   3'- uuUUGGUCCA---UGuGCUUGAaa----UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 46085 0.66 0.999955
Target:  5'- -uGGCCGG--ACACGAGCacgUACgGCCg -3'
miRNA:   3'- uuUUGGUCcaUGUGCUUGaa-AUG-CGG- -5'
23742 3' -46.2 NC_005261.1 + 46473 0.71 0.989671
Target:  5'- cGAAGCgCAGGUGCA---GCUcgGCGCCc -3'
miRNA:   3'- -UUUUG-GUCCAUGUgcuUGAaaUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.