miRNA display CGI


Results 61 - 80 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 3' -46.2 NC_005261.1 + 47073 0.68 0.998848
Target:  5'- --cGCguGGUACGCGuGC---ACGCCg -3'
miRNA:   3'- uuuUGguCCAUGUGCuUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 47983 0.66 0.99986
Target:  5'- -cGACCAGG---GCGAACacgGCGUCg -3'
miRNA:   3'- uuUUGGUCCaugUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 49063 0.72 0.977991
Target:  5'- -cGGCCAGGUuCGCGaAGCgggcacGCGCCg -3'
miRNA:   3'- uuUUGGUCCAuGUGC-UUGaaa---UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 49773 0.68 0.999393
Target:  5'- uAGAUCAGc-ACGCGGACgucGCGCCa -3'
miRNA:   3'- uUUUGGUCcaUGUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 50091 0.67 0.999818
Target:  5'- -uGACCAcGUGCACGcuGCcc-GCGCCg -3'
miRNA:   3'- uuUUGGUcCAUGUGCu-UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 50436 0.68 0.999063
Target:  5'- -cGugCAGcGUGCGCGugaAGCU--GCGCCg -3'
miRNA:   3'- uuUugGUC-CAUGUGC---UUGAaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 53894 0.66 0.99994
Target:  5'- cGAAgCGGGcccgcuuCGCGAGCg--GCGCCc -3'
miRNA:   3'- uUUUgGUCCau-----GUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 53930 0.67 0.999699
Target:  5'- -uGACCAca-GCACGAGCgcggcGCGCCg -3'
miRNA:   3'- uuUUGGUccaUGUGCUUGaaa--UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 54176 0.68 0.999243
Target:  5'- gAAGACCaAGGggaggaGCGCGcACcggUGCGCCa -3'
miRNA:   3'- -UUUUGG-UCCa-----UGUGCuUGaa-AUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 54363 0.67 0.99974
Target:  5'- ---cCCAGGUcCGCGGGCagcggcucgggGCGCCc -3'
miRNA:   3'- uuuuGGUCCAuGUGCUUGaaa--------UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 54690 0.66 0.999919
Target:  5'- ---uCCAGGUGCGCGAggccGCagcuCGCg -3'
miRNA:   3'- uuuuGGUCCAUGUGCU----UGaaauGCGg -5'
23742 3' -46.2 NC_005261.1 + 54818 0.69 0.997932
Target:  5'- --cACCAGGUccgcgucauACGCGGgcagggcuaGCUgccgGCGCCg -3'
miRNA:   3'- uuuUGGUCCA---------UGUGCU---------UGAaa--UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 55963 0.71 0.992225
Target:  5'- --cGCCGGGUcuccCGCGAGCgc--CGCCg -3'
miRNA:   3'- uuuUGGUCCAu---GUGCUUGaaauGCGG- -5'
23742 3' -46.2 NC_005261.1 + 56269 0.75 0.924166
Target:  5'- --uGCaCGGGUACuGCGAGCUg-GCGCCg -3'
miRNA:   3'- uuuUG-GUCCAUG-UGCUUGAaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 56345 0.66 0.99986
Target:  5'- cGAGGCCGGGUuaaauaccgGCACcGGCgagGCGCa -3'
miRNA:   3'- -UUUUGGUCCA---------UGUGcUUGaaaUGCGg -5'
23742 3' -46.2 NC_005261.1 + 58050 0.7 0.995827
Target:  5'- -cGGCCgcgugauguagaGGGUgACGCGGACggcgGCGCCa -3'
miRNA:   3'- uuUUGG------------UCCA-UGUGCUUGaaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 58488 0.68 0.999243
Target:  5'- cAGGCC-GGcGCGCGGccGCUUUugGCGCCc -3'
miRNA:   3'- uUUUGGuCCaUGUGCU--UGAAA--UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 59029 0.67 0.999668
Target:  5'- --cGCCAGGaacgggugccgccGCGCGAGCUcaGCGCg -3'
miRNA:   3'- uuuUGGUCCa------------UGUGCUUGAaaUGCGg -5'
23742 3' -46.2 NC_005261.1 + 59067 0.66 0.99994
Target:  5'- -cGGCCGcGGagaGCGCGcGCgggUGCGCCg -3'
miRNA:   3'- uuUUGGU-CCa--UGUGCuUGaa-AUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 59234 0.72 0.977991
Target:  5'- --cGCCGGGc-CACGAGCgagagcggGCGCCg -3'
miRNA:   3'- uuuUGGUCCauGUGCUUGaaa-----UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.