miRNA display CGI


Results 81 - 100 of 181 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 3' -46.2 NC_005261.1 + 59325 0.66 0.999919
Target:  5'- -cGGCCAGcGUGCGCGcccGCcggguCGCCg -3'
miRNA:   3'- uuUUGGUC-CAUGUGCu--UGaaau-GCGG- -5'
23742 3' -46.2 NC_005261.1 + 59913 0.68 0.999063
Target:  5'- gAAGAgCAGGUcgACGAGCU---CGCCg -3'
miRNA:   3'- -UUUUgGUCCAugUGCUUGAaauGCGG- -5'
23742 3' -46.2 NC_005261.1 + 60323 0.71 0.991019
Target:  5'- -cGAUCAGGUGgACGAcgguguuuGCg--GCGCCg -3'
miRNA:   3'- uuUUGGUCCAUgUGCU--------UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 61972 0.68 0.999063
Target:  5'- -cAGCCGGGUcGC-CGAGCUgauccaggcCGCCa -3'
miRNA:   3'- uuUUGGUCCA-UGuGCUUGAaau------GCGG- -5'
23742 3' -46.2 NC_005261.1 + 62194 0.67 0.999691
Target:  5'- gAAGACCaugugcagcgcgaGGGUGCGCGcggccGCgucUGCGCCc -3'
miRNA:   3'- -UUUUGG-------------UCCAUGUGCu----UGaa-AUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 62428 0.66 0.99986
Target:  5'- cGAGGCCA---GCGCGAGCcgguCGCCg -3'
miRNA:   3'- -UUUUGGUccaUGUGCUUGaaauGCGG- -5'
23742 3' -46.2 NC_005261.1 + 62899 0.67 0.999699
Target:  5'- cGAGGCgGGGcgGgGCGGACgc-GCGCCc -3'
miRNA:   3'- -UUUUGgUCCa-UgUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 63941 0.67 0.999617
Target:  5'- cGAAGcCCGGGUGCagccccguGCGcAGCUggUGCGUCa -3'
miRNA:   3'- -UUUU-GGUCCAUG--------UGC-UUGAa-AUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 64482 0.72 0.980417
Target:  5'- --cGCCGGGUGCAgCGggUg--GCGCg -3'
miRNA:   3'- uuuUGGUCCAUGU-GCuuGaaaUGCGg -5'
23742 3' -46.2 NC_005261.1 + 64833 0.75 0.935394
Target:  5'- --cGCCGGGUcCGCGcGCUgcaGCGCCa -3'
miRNA:   3'- uuuUGGUCCAuGUGCuUGAaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 65450 0.74 0.954518
Target:  5'- aAAGGCCGGGUGCAgcuCGAGCggcaugUUuggguugccggGCGCCa -3'
miRNA:   3'- -UUUUGGUCCAUGU---GCUUGa-----AA-----------UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 65582 0.69 0.998288
Target:  5'- --cACCuGGUcCGCGAGCUccugcuCGCCg -3'
miRNA:   3'- uuuUGGuCCAuGUGCUUGAaau---GCGG- -5'
23742 3' -46.2 NC_005261.1 + 65940 0.67 0.999617
Target:  5'- -uGGCCuGGUACACGcGCUUcucuaGgGCCu -3'
miRNA:   3'- uuUUGGuCCAUGUGCuUGAAa----UgCGG- -5'
23742 3' -46.2 NC_005261.1 + 66145 0.67 0.999798
Target:  5'- --cACCAGGUucagccccgagauCAUGAACUcgccgUACGUCa -3'
miRNA:   3'- uuuUGGUCCAu------------GUGCUUGAa----AUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 66340 0.66 0.999874
Target:  5'- --cACgAGGUcugcgaucuuggccaGCGCGAGCUc-GCGCCc -3'
miRNA:   3'- uuuUGgUCCA---------------UGUGCUUGAaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 67879 0.68 0.999063
Target:  5'- ---cCCGGGcgGCGCGggUaa-GCGCCg -3'
miRNA:   3'- uuuuGGUCCa-UGUGCuuGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 68401 0.69 0.997031
Target:  5'- -cGACCGGGUAcCACGAcaccgaGCg--GCGCg -3'
miRNA:   3'- uuUUGGUCCAU-GUGCU------UGaaaUGCGg -5'
23742 3' -46.2 NC_005261.1 + 68685 0.67 0.999617
Target:  5'- --cGCCgcgugGGGgccgGCGCGGACgacggcgGCGCCg -3'
miRNA:   3'- uuuUGG-----UCCa---UGUGCUUGaaa----UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 68792 0.66 0.99994
Target:  5'- -cGugCAGGUGCggcucaucccGCGGACccacaACGCCu -3'
miRNA:   3'- uuUugGUCCAUG----------UGCUUGaaa--UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 70355 0.68 0.998848
Target:  5'- gGGGACCGGGaggcgGCGCGccuccACg--GCGCCg -3'
miRNA:   3'- -UUUUGGUCCa----UGUGCu----UGaaaUGCGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.