miRNA display CGI


Results 1 - 20 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 3' -46.2 NC_005261.1 + 138111 0.68 0.999393
Target:  5'- cGGACCGGG-ACGgGGACgg-GgGCCg -3'
miRNA:   3'- uUUUGGUCCaUGUgCUUGaaaUgCGG- -5'
23742 3' -46.2 NC_005261.1 + 136570 0.74 0.950148
Target:  5'- gAAGGCgCGGGUGgGCGGGCgcagagACGCCc -3'
miRNA:   3'- -UUUUG-GUCCAUgUGCUUGaaa---UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 134610 0.67 0.999617
Target:  5'- --cGCCGGGUcuggUGCGAACgcgGCGUCg -3'
miRNA:   3'- uuuUGGUCCAu---GUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 133853 0.66 0.99994
Target:  5'- -uGGCCGGcGcGCGCGA-CUgccGCGCCu -3'
miRNA:   3'- uuUUGGUC-CaUGUGCUuGAaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 133730 0.69 0.997932
Target:  5'- ---gUCGGGgcgGCGCGGACa--ACGCCa -3'
miRNA:   3'- uuuuGGUCCa--UGUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 132894 0.77 0.876143
Target:  5'- cAAGCCGGGcgcCGCGGGCg--GCGCCg -3'
miRNA:   3'- uUUUGGUCCau-GUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 131715 0.67 0.999691
Target:  5'- gAGAGCCAggcggcgcgcuucGGUgggugcugcACGCGGACggcACGCCg -3'
miRNA:   3'- -UUUUGGU-------------CCA---------UGUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 129526 0.78 0.842986
Target:  5'- aGGAACgAGGcGCGCGGGCU--ACGCCg -3'
miRNA:   3'- -UUUUGgUCCaUGUGCUUGAaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 127866 0.78 0.842986
Target:  5'- --cGCCAGG-GCACGAGCgggagucGCGCCg -3'
miRNA:   3'- uuuUGGUCCaUGUGCUUGaaa----UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 127625 0.66 0.99986
Target:  5'- -cGGCCGGccggACGCGAcgGCggcgGCGCCg -3'
miRNA:   3'- uuUUGGUCca--UGUGCU--UGaaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 126764 0.7 0.994251
Target:  5'- --cGCCAGGUACAUGGcgcccACUaccGCGUCu -3'
miRNA:   3'- uuuUGGUCCAUGUGCU-----UGAaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 125873 0.68 0.998848
Target:  5'- -cGGCCGGGgcgGCGCccuuGGCUgaagGCGCCu -3'
miRNA:   3'- uuUUGGUCCa--UGUGc---UUGAaa--UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 125809 0.69 0.997031
Target:  5'- uGGGCCGGGgccgcCGCGAGCg--GgGCCg -3'
miRNA:   3'- uUUUGGUCCau---GUGCUUGaaaUgCGG- -5'
23742 3' -46.2 NC_005261.1 + 125754 0.69 0.997515
Target:  5'- cGGGGCCAGGgcugcCGCGGGCUcgGCuaagGCCa -3'
miRNA:   3'- -UUUUGGUCCau---GUGCUUGAaaUG----CGG- -5'
23742 3' -46.2 NC_005261.1 + 123926 0.66 0.99994
Target:  5'- -cGAgCAGGUGCGCGcccGCUagaUACaGCCa -3'
miRNA:   3'- uuUUgGUCCAUGUGCu--UGAa--AUG-CGG- -5'
23742 3' -46.2 NC_005261.1 + 123414 0.67 0.999516
Target:  5'- -cGGCCAGGg--GCGGGCU---CGCCa -3'
miRNA:   3'- uuUUGGUCCaugUGCUUGAaauGCGG- -5'
23742 3' -46.2 NC_005261.1 + 121693 0.67 0.999765
Target:  5'- ---uCCAGGUugcGCAUGGagGCguagACGCCg -3'
miRNA:   3'- uuuuGGUCCA---UGUGCU--UGaaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 121647 0.67 0.999699
Target:  5'- --cGCCGGcGaGCGCGGGCUguccGCGUCg -3'
miRNA:   3'- uuuUGGUC-CaUGUGCUUGAaa--UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 121361 0.67 0.999699
Target:  5'- --cGCaCAGGUuCGCGuACUgcagGCGCCc -3'
miRNA:   3'- uuuUG-GUCCAuGUGCuUGAaa--UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 118366 0.66 0.999905
Target:  5'- -cGGCCGGGcGCugGGGCgcgcggcccgagGCGCUg -3'
miRNA:   3'- uuUUGGUCCaUGugCUUGaaa---------UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.