miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 3' -46.2 NC_005261.1 + 117067 0.67 0.999617
Target:  5'- -cAGCCuGGUuaaGCACGAGCUcgGCGa- -3'
miRNA:   3'- uuUUGGuCCA---UGUGCUUGAaaUGCgg -5'
23742 3' -46.2 NC_005261.1 + 113649 0.68 0.999243
Target:  5'- -cGACCAGGaGCGCcugaucGAcCUcUGCGCCg -3'
miRNA:   3'- uuUUGGUCCaUGUG------CUuGAaAUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 112090 0.67 0.999617
Target:  5'- --cGCCAcguGGUGCGCGGugUUcaACGCg -3'
miRNA:   3'- uuuUGGU---CCAUGUGCUugAAa-UGCGg -5'
23742 3' -46.2 NC_005261.1 + 110682 0.69 0.997515
Target:  5'- --cGCCuGGaGCACGAggGCUUccGCGCCc -3'
miRNA:   3'- uuuUGGuCCaUGUGCU--UGAAa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 109874 0.67 0.999818
Target:  5'- -cAGCgGGGccCGCGGGCgg-GCGCCc -3'
miRNA:   3'- uuUUGgUCCauGUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 109669 0.66 0.999934
Target:  5'- cGAGCgCGGGUGCugaGCGGACgagggacgauggccGCGCCu -3'
miRNA:   3'- uUUUG-GUCCAUG---UGCUUGaaa-----------UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 108195 0.66 0.99994
Target:  5'- ---uCCGGGcGCGaGAGCU--GCGCCa -3'
miRNA:   3'- uuuuGGUCCaUGUgCUUGAaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 105566 0.76 0.897654
Target:  5'- cAGGGCCAGGUACGCGuagagggccucggGGCgcgUGCGCg -3'
miRNA:   3'- -UUUUGGUCCAUGUGC-------------UUGaa-AUGCGg -5'
23742 3' -46.2 NC_005261.1 + 105382 0.7 0.995827
Target:  5'- --cGCgCGGGUGCGCGcuGACcacGCGCCg -3'
miRNA:   3'- uuuUG-GUCCAUGUGC--UUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 103920 0.67 0.999617
Target:  5'- --cGCCAGGUcggGCGCGGcguCUgccagACGCUg -3'
miRNA:   3'- uuuUGGUCCA---UGUGCUu--GAaa---UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 102761 0.66 0.99986
Target:  5'- --uGCCGcGG-ACGCGAGC---GCGCCc -3'
miRNA:   3'- uuuUGGU-CCaUGUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 101956 0.66 0.99986
Target:  5'- cGAGCCGGG-GCACGGccGCcagguCGCCc -3'
miRNA:   3'- uUUUGGUCCaUGUGCU--UGaaau-GCGG- -5'
23742 3' -46.2 NC_005261.1 + 99997 0.79 0.786719
Target:  5'- --cACCAGGUGCAUGAAg---GCGCCc -3'
miRNA:   3'- uuuUGGUCCAUGUGCUUgaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 98355 0.66 0.999893
Target:  5'- gGGGGCgGGGguggGCGCGGGCUcuggcggGCGCa -3'
miRNA:   3'- -UUUUGgUCCa---UGUGCUUGAaa-----UGCGg -5'
23742 3' -46.2 NC_005261.1 + 98190 0.71 0.991019
Target:  5'- --cGCCGGGgGCGCGGcgggcaGCgg-GCGCCg -3'
miRNA:   3'- uuuUGGUCCaUGUGCU------UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 95768 0.66 0.99986
Target:  5'- --cGCCGGGagccuCGCGcGCU--GCGCCg -3'
miRNA:   3'- uuuUGGUCCau---GUGCuUGAaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 95640 0.66 0.99986
Target:  5'- -cGGCUGGGcgaGCGCGAcGCgcgGCGCCg -3'
miRNA:   3'- uuUUGGUCCa--UGUGCU-UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 94561 0.7 0.996471
Target:  5'- --cGCCGGGUcgaACGCG-ACguaggggGCGCCg -3'
miRNA:   3'- uuuUGGUCCA---UGUGCuUGaaa----UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 94219 0.68 0.998848
Target:  5'- --cAUCAGGUAgACGAACUcgaagGCGgCg -3'
miRNA:   3'- uuuUGGUCCAUgUGCUUGAaa---UGCgG- -5'
23742 3' -46.2 NC_005261.1 + 94161 0.66 0.999893
Target:  5'- ---cCCGGGU-CGCGAAg---GCGCCc -3'
miRNA:   3'- uuuuGGUCCAuGUGCUUgaaaUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.