miRNA display CGI


Results 41 - 60 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 3' -46.2 NC_005261.1 + 93666 0.69 0.998288
Target:  5'- --cACC-GGUcCGCGGGCggcgGCGCCg -3'
miRNA:   3'- uuuUGGuCCAuGUGCUUGaaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 92809 0.68 0.999393
Target:  5'- --cGCCGGGcGCGCGGGCgugggaccGCGCg -3'
miRNA:   3'- uuuUGGUCCaUGUGCUUGaaa-----UGCGg -5'
23742 3' -46.2 NC_005261.1 + 92145 0.67 0.999818
Target:  5'- uGGGCCAGG-ACcucgGCGAGCgc-GCGCUc -3'
miRNA:   3'- uUUUGGUCCaUG----UGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 91538 0.69 0.997932
Target:  5'- gAGGAcCCGGGcUACGCGcGCgcccGCGCCg -3'
miRNA:   3'- -UUUU-GGUCC-AUGUGCuUGaaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 91185 0.72 0.982637
Target:  5'- --cGCCGGGcuuCGCGcGCUUcgGCGCCg -3'
miRNA:   3'- uuuUGGUCCau-GUGCuUGAAa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 90299 0.66 0.999955
Target:  5'- -cGACCccgucauGGUGCugGA-CUUUGCcaGCCu -3'
miRNA:   3'- uuUUGGu------CCAUGugCUuGAAAUG--CGG- -5'
23742 3' -46.2 NC_005261.1 + 88724 0.73 0.966051
Target:  5'- --uGCgGGGUGCGCGAugagggccaGCUgguggACGCCa -3'
miRNA:   3'- uuuUGgUCCAUGUGCU---------UGAaa---UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 88173 0.72 0.977991
Target:  5'- cGGGCCGGGgcgACGCcGGCg--GCGCCg -3'
miRNA:   3'- uUUUGGUCCa--UGUGcUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 87933 0.69 0.997932
Target:  5'- ---cCCGGGgcCugGAGCcgcGCGCCg -3'
miRNA:   3'- uuuuGGUCCauGugCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 87127 0.86 0.455029
Target:  5'- aAGGGCCgcGGGUACGCGAGCUgcuCGCCg -3'
miRNA:   3'- -UUUUGG--UCCAUGUGCUUGAaauGCGG- -5'
23742 3' -46.2 NC_005261.1 + 87012 0.68 0.999063
Target:  5'- gAAGGCCAaGUGCGCGGccccgcGCGCCa -3'
miRNA:   3'- -UUUUGGUcCAUGUGCUugaaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 86440 0.76 0.891217
Target:  5'- --cGCCAGGUgguccaGCGCGAACUccuggcccGCGCCg -3'
miRNA:   3'- uuuUGGUCCA------UGUGCUUGAaa------UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 85100 0.68 0.999063
Target:  5'- --cACCAGGUugGCcAugUaaaacUGCGCCa -3'
miRNA:   3'- uuuUGGUCCAugUGcUugAa----AUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 84532 0.68 0.999227
Target:  5'- ---uCCAGGUccaugugcuccacACGCGGGCccaGCGCCu -3'
miRNA:   3'- uuuuGGUCCA-------------UGUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 83767 0.68 0.999063
Target:  5'- -cGGCCGGGUcGCAgcgccCGAGCa--GCGCCa -3'
miRNA:   3'- uuUUGGUCCA-UGU-----GCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 83410 0.7 0.996471
Target:  5'- -cGAgCAGGUGCGCGAAgUUga-GCUg -3'
miRNA:   3'- uuUUgGUCCAUGUGCUUgAAaugCGG- -5'
23742 3' -46.2 NC_005261.1 + 80867 0.66 0.99986
Target:  5'- ---cCCAGGcgcgcucagccGCGCGGGCUUcagcgGCGCCu -3'
miRNA:   3'- uuuuGGUCCa----------UGUGCUUGAAa----UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 80747 0.69 0.997031
Target:  5'- ----aCGGGUACAcCGAGC---GCGCCu -3'
miRNA:   3'- uuuugGUCCAUGU-GCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 80104 0.67 0.999516
Target:  5'- --cGCCGcGGUAC-CG-GCUUggGCGCCg -3'
miRNA:   3'- uuuUGGU-CCAUGuGCuUGAAa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 80074 0.67 0.999765
Target:  5'- gGGGGCguGGgggACGCGGACcg-GCGCg -3'
miRNA:   3'- -UUUUGguCCa--UGUGCUUGaaaUGCGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.