miRNA display CGI


Results 61 - 80 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 3' -46.2 NC_005261.1 + 78834 0.68 0.998848
Target:  5'- gGGAGCUGcGGUACGCcGGCg--GCGCCc -3'
miRNA:   3'- -UUUUGGU-CCAUGUGcUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 78632 0.68 0.998848
Target:  5'- --cGCCAGGUccgccgaguucGCGCGAGCga---GCCc -3'
miRNA:   3'- uuuUGGUCCA-----------UGUGCUUGaaaugCGG- -5'
23742 3' -46.2 NC_005261.1 + 77764 0.66 0.99994
Target:  5'- -cAGCCGGGgcgGCGgGGACgacgAgGCCu -3'
miRNA:   3'- uuUUGGUCCa--UGUgCUUGaaa-UgCGG- -5'
23742 3' -46.2 NC_005261.1 + 77452 0.66 0.999919
Target:  5'- -cAGCCAGGcccgggGCGCG-GCUgcagccGCGCCc -3'
miRNA:   3'- uuUUGGUCCa-----UGUGCuUGAaa----UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 76072 0.7 0.996471
Target:  5'- --cACCAGG---GCGGGCUgcUGCGCCu -3'
miRNA:   3'- uuuUGGUCCaugUGCUUGAa-AUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 75604 0.67 0.999765
Target:  5'- --cGCCGcGG-ACGCGGACg--GCGUCg -3'
miRNA:   3'- uuuUGGU-CCaUGUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 74987 0.66 0.999955
Target:  5'- --cGCCGGGUGCAgaucgccaaGAACgaccCGCCc -3'
miRNA:   3'- uuuUGGUCCAUGUg--------CUUGaaauGCGG- -5'
23742 3' -46.2 NC_005261.1 + 74667 0.72 0.980417
Target:  5'- cAGGCCGGGgACGCGGACgcgaccGCGCg -3'
miRNA:   3'- uUUUGGUCCaUGUGCUUGaaa---UGCGg -5'
23742 3' -46.2 NC_005261.1 + 74519 0.71 0.989671
Target:  5'- --cGCCGGGgcCAUGGcGCUUggGCGCCu -3'
miRNA:   3'- uuuUGGUCCauGUGCU-UGAAa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 73405 0.67 0.999818
Target:  5'- --cACCAGGUACggggccGCGAACc--GgGCCu -3'
miRNA:   3'- uuuUGGUCCAUG------UGCUUGaaaUgCGG- -5'
23742 3' -46.2 NC_005261.1 + 73081 0.7 0.996471
Target:  5'- --cGCCAGGaGCGCGuagGCgUUGCGCa -3'
miRNA:   3'- uuuUGGUCCaUGUGCu--UGaAAUGCGg -5'
23742 3' -46.2 NC_005261.1 + 72927 0.66 0.99986
Target:  5'- cAAACaGGGUGuCGCGcAGCgccgGCGCCg -3'
miRNA:   3'- uUUUGgUCCAU-GUGC-UUGaaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 72894 0.67 0.999699
Target:  5'- --cGCCGGGguagagcuCGCGGcACUUgaGCGCCg -3'
miRNA:   3'- uuuUGGUCCau------GUGCU-UGAAa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 72701 0.68 0.999393
Target:  5'- --cGCCAGGUcCGCcAGCgucGCGCCc -3'
miRNA:   3'- uuuUGGUCCAuGUGcUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 72492 0.7 0.995827
Target:  5'- --cGCCAGGagcgccGCGCGAaGCgg-GCGCCg -3'
miRNA:   3'- uuuUGGUCCa-----UGUGCU-UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 72017 0.66 0.99994
Target:  5'- --cGCCGGGg--GCGAcGCUgcGCGCCc -3'
miRNA:   3'- uuuUGGUCCaugUGCU-UGAaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 71496 0.71 0.989089
Target:  5'- -cGGCCAGGUGCgcgcgaaagucgGCGGGCUcguccgcguacgACGCCa -3'
miRNA:   3'- uuUUGGUCCAUG------------UGCUUGAaa----------UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 71205 0.66 0.99986
Target:  5'- -cGGCCAGcUGCGCGAugg-UGCGCg -3'
miRNA:   3'- uuUUGGUCcAUGUGCUugaaAUGCGg -5'
23742 3' -46.2 NC_005261.1 + 70915 0.69 0.998591
Target:  5'- --cGCCAcGUcccGCGCGAGCUccaGCGCCu -3'
miRNA:   3'- uuuUGGUcCA---UGUGCUUGAaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 70575 0.68 0.998848
Target:  5'- aAGAGCUcGG-GCGCGAGCgcagcggcgUGCGCCc -3'
miRNA:   3'- -UUUUGGuCCaUGUGCUUGaa-------AUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.