miRNA display CGI


Results 21 - 40 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 3' -46.2 NC_005261.1 + 49063 0.72 0.977991
Target:  5'- -cGGCCAGGUuCGCGaAGCgggcacGCGCCg -3'
miRNA:   3'- uuUUGGUCCAuGUGC-UUGaaa---UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 2088 0.72 0.977991
Target:  5'- gAAGGCCAGGUcccgcguCGCGAGCagcagcACGCCc -3'
miRNA:   3'- -UUUUGGUCCAu------GUGCUUGaaa---UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 1550 0.75 0.918131
Target:  5'- cAGGCCAGGUACAcCGGccgcaGCggcGCGCCg -3'
miRNA:   3'- uUUUGGUCCAUGU-GCU-----UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 105566 0.76 0.897654
Target:  5'- cAGGGCCAGGUACGCGuagagggccucggGGCgcgUGCGCg -3'
miRNA:   3'- -UUUUGGUCCAUGUGC-------------UUGaa-AUGCGg -5'
23742 3' -46.2 NC_005261.1 + 86440 0.76 0.891217
Target:  5'- --cGCCAGGUgguccaGCGCGAACUccuggcccGCGCCg -3'
miRNA:   3'- uuuUGGUCCA------UGUGCUUGAaa------UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 44897 0.77 0.883811
Target:  5'- -uGGCCGGGgcgUACACGGACcc-ACGCCg -3'
miRNA:   3'- uuUUGGUCC---AUGUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 132894 0.77 0.876143
Target:  5'- cAAGCCGGGcgcCGCGGGCg--GCGCCg -3'
miRNA:   3'- uUUUGGUCCau-GUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 129526 0.78 0.842986
Target:  5'- aGGAACgAGGcGCGCGGGCU--ACGCCg -3'
miRNA:   3'- -UUUUGgUCCaUGUGCUUGAaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 127866 0.78 0.842986
Target:  5'- --cGCCAGG-GCACGAGCgggagucGCGCCg -3'
miRNA:   3'- uuuUGGUCCaUGUGCUUGaaa----UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 99997 0.79 0.786719
Target:  5'- --cACCAGGUGCAUGAAg---GCGCCc -3'
miRNA:   3'- uuuUGGUCCAUGUGCUUgaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 56269 0.75 0.924166
Target:  5'- --uGCaCGGGUACuGCGAGCUg-GCGCCg -3'
miRNA:   3'- uuuUG-GUCCAUG-UGCUUGAaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 2680 0.75 0.935394
Target:  5'- gGGGACCcGGcgGCGCGccGGCUUUugGCCg -3'
miRNA:   3'- -UUUUGGuCCa-UGUGC--UUGAAAugCGG- -5'
23742 3' -46.2 NC_005261.1 + 33826 0.73 0.975351
Target:  5'- -cGGCCGGGggGCGCGGGCccccugGCGCUg -3'
miRNA:   3'- uuUUGGUCCa-UGUGCUUGaaa---UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 13440 0.73 0.966051
Target:  5'- -cGACCGGGUGCAgGcaGGCcg-GCGCCu -3'
miRNA:   3'- uuUUGGUCCAUGUgC--UUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 88724 0.73 0.966051
Target:  5'- --uGCgGGGUGCGCGAugagggccaGCUgguggACGCCa -3'
miRNA:   3'- uuuUGgUCCAUGUGCU---------UGAaa---UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 1196 0.74 0.954518
Target:  5'- cGGGGCCGGGcgcgGCGCGGACccccCGCCg -3'
miRNA:   3'- -UUUUGGUCCa---UGUGCUUGaaauGCGG- -5'
23742 3' -46.2 NC_005261.1 + 65450 0.74 0.954518
Target:  5'- aAAGGCCGGGUGCAgcuCGAGCggcaugUUuggguugccggGCGCCa -3'
miRNA:   3'- -UUUUGGUCCAUGU---GCUUGa-----AA-----------UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 136570 0.74 0.950148
Target:  5'- gAAGGCgCGGGUGgGCGGGCgcagagACGCCc -3'
miRNA:   3'- -UUUUG-GUCCAUgUGCUUGaaa---UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 18339 0.74 0.945506
Target:  5'- cAGGCCGGGgcgcaGCACGAGCg--ACGUCc -3'
miRNA:   3'- uUUUGGUCCa----UGUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 64833 0.75 0.935394
Target:  5'- --cGCCGGGUcCGCGcGCUgcaGCGCCa -3'
miRNA:   3'- uuuUGGUCCAuGUGCuUGAaa-UGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.