Results 41 - 60 of 181 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
23742 | 3' | -46.2 | NC_005261.1 | + | 44897 | 0.77 | 0.883811 |
Target: 5'- -uGGCCGGGgcgUACACGGACcc-ACGCCg -3' miRNA: 3'- uuUUGGUCC---AUGUGCUUGaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 132894 | 0.77 | 0.876143 |
Target: 5'- cAAGCCGGGcgcCGCGGGCg--GCGCCg -3' miRNA: 3'- uUUUGGUCCau-GUGCUUGaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 129526 | 0.78 | 0.842986 |
Target: 5'- aGGAACgAGGcGCGCGGGCU--ACGCCg -3' miRNA: 3'- -UUUUGgUCCaUGUGCUUGAaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 127866 | 0.78 | 0.842986 |
Target: 5'- --cGCCAGG-GCACGAGCgggagucGCGCCg -3' miRNA: 3'- uuuUGGUCCaUGUGCUUGaaa----UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 99997 | 0.79 | 0.786719 |
Target: 5'- --cACCAGGUGCAUGAAg---GCGCCc -3' miRNA: 3'- uuuUGGUCCAUGUGCUUgaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 65450 | 0.74 | 0.954518 |
Target: 5'- aAAGGCCGGGUGCAgcuCGAGCggcaugUUuggguugccggGCGCCa -3' miRNA: 3'- -UUUUGGUCCAUGU---GCUUGa-----AA-----------UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 1196 | 0.74 | 0.954518 |
Target: 5'- cGGGGCCGGGcgcgGCGCGGACccccCGCCg -3' miRNA: 3'- -UUUUGGUCCa---UGUGCUUGaaauGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 1735 | 0.72 | 0.986503 |
Target: 5'- --cACCGcGGUGCGCGGGCccagGCGCg -3' miRNA: 3'- uuuUGGU-CCAUGUGCUUGaaa-UGCGg -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 31002 | 0.72 | 0.984663 |
Target: 5'- -cGGCCGGGgcCAgGGGCccgGCGCCg -3' miRNA: 3'- uuUUGGUCCauGUgCUUGaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 91185 | 0.72 | 0.982637 |
Target: 5'- --cGCCGGGcuuCGCGcGCUUcgGCGCCg -3' miRNA: 3'- uuuUGGUCCau-GUGCuUGAAa-UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 74667 | 0.72 | 0.980417 |
Target: 5'- cAGGCCGGGgACGCGGACgcgaccGCGCg -3' miRNA: 3'- uUUUGGUCCaUGUGCUUGaaa---UGCGg -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 64482 | 0.72 | 0.980417 |
Target: 5'- --cGCCGGGUGCAgCGggUg--GCGCg -3' miRNA: 3'- uuuUGGUCCAUGU-GCuuGaaaUGCGg -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 36642 | 0.72 | 0.977991 |
Target: 5'- cGAAGCC-GGcGCGCGGGCUUgGgGCCa -3' miRNA: 3'- -UUUUGGuCCaUGUGCUUGAAaUgCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 88173 | 0.72 | 0.977991 |
Target: 5'- cGGGCCGGGgcgACGCcGGCg--GCGCCg -3' miRNA: 3'- uUUUGGUCCa--UGUGcUUGaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 59234 | 0.72 | 0.977991 |
Target: 5'- --cGCCGGGc-CACGAGCgagagcggGCGCCg -3' miRNA: 3'- uuuUGGUCCauGUGCUUGaaa-----UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 49063 | 0.72 | 0.977991 |
Target: 5'- -cGGCCAGGUuCGCGaAGCgggcacGCGCCg -3' miRNA: 3'- uuUUGGUCCAuGUGC-UUGaaa---UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 2088 | 0.72 | 0.977991 |
Target: 5'- gAAGGCCAGGUcccgcguCGCGAGCagcagcACGCCc -3' miRNA: 3'- -UUUUGGUCCAu------GUGCUUGaaa---UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 33826 | 0.73 | 0.975351 |
Target: 5'- -cGGCCGGGggGCGCGGGCccccugGCGCUg -3' miRNA: 3'- uuUUGGUCCa-UGUGCUUGaaa---UGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 13440 | 0.73 | 0.966051 |
Target: 5'- -cGACCGGGUGCAgGcaGGCcg-GCGCCu -3' miRNA: 3'- uuUUGGUCCAUGUgC--UUGaaaUGCGG- -5' |
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23742 | 3' | -46.2 | NC_005261.1 | + | 88724 | 0.73 | 0.966051 |
Target: 5'- --uGCgGGGUGCGCGAugagggccaGCUgguggACGCCa -3' miRNA: 3'- uuuUGgUCCAUGUGCU---------UGAaa---UGCGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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