miRNA display CGI


Results 81 - 100 of 181 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 3' -46.2 NC_005261.1 + 126764 0.7 0.994251
Target:  5'- --cGCCAGGUACAUGGcgcccACUaccGCGUCu -3'
miRNA:   3'- uuuUGGUCCAUGUGCU-----UGAaa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 19507 0.7 0.99509
Target:  5'- gGAGugCAGGUACGCGAggccccgcagcACggcccGCGUCa -3'
miRNA:   3'- -UUUugGUCCAUGUGCU-----------UGaaa--UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 32282 0.7 0.99509
Target:  5'- --cGCCGcuGGUGCugGAgGCgg-GCGCCg -3'
miRNA:   3'- uuuUGGU--CCAUGugCU-UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 31562 0.7 0.995827
Target:  5'- uGGGCCGGGUccuGgACGGGC---GCGCCg -3'
miRNA:   3'- uUUUGGUCCA---UgUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 42182 0.7 0.995827
Target:  5'- uGGACgCAGG-GCGCGAGCcgcuccacgGCGCCg -3'
miRNA:   3'- uUUUG-GUCCaUGUGCUUGaaa------UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 72492 0.7 0.995827
Target:  5'- --cGCCAGGagcgccGCGCGAaGCgg-GCGCCg -3'
miRNA:   3'- uuuUGGUCCa-----UGUGCU-UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 23179 0.7 0.995827
Target:  5'- --cGCCGGGggcgACAgCGAGC---GCGCCg -3'
miRNA:   3'- uuuUGGUCCa---UGU-GCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 34410 0.71 0.992225
Target:  5'- -cGACCGGGUgGCGCGcGGCcc-GCGCCu -3'
miRNA:   3'- uuUUGGUCCA-UGUGC-UUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 21027 0.71 0.992225
Target:  5'- cGAGCCcuGGGgGCGCGcACcgUGCGCCa -3'
miRNA:   3'- uUUUGG--UCCaUGUGCuUGaaAUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 4178 0.71 0.992225
Target:  5'- ---uCCGGGccCGCGAGCUUcGCGCUc -3'
miRNA:   3'- uuuuGGUCCauGUGCUUGAAaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 91185 0.72 0.982637
Target:  5'- --cGCCGGGcuuCGCGcGCUUcgGCGCCg -3'
miRNA:   3'- uuuUGGUCCau-GUGCuUGAAa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 31002 0.72 0.984663
Target:  5'- -cGGCCGGGgcCAgGGGCccgGCGCCg -3'
miRNA:   3'- uuUUGGUCCauGUgCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 1735 0.72 0.986503
Target:  5'- --cACCGcGGUGCGCGGGCccagGCGCg -3'
miRNA:   3'- uuuUGGU-CCAUGUGCUUGaaa-UGCGg -5'
23742 3' -46.2 NC_005261.1 + 13038 0.71 0.988169
Target:  5'- cGAGCCAGG-GCGCGGggccGCgc-GCGCCc -3'
miRNA:   3'- uUUUGGUCCaUGUGCU----UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 71496 0.71 0.989089
Target:  5'- -cGGCCAGGUGCgcgcgaaagucgGCGGGCUcguccgcguacgACGCCa -3'
miRNA:   3'- uuUUGGUCCAUG------------UGCUUGAaa----------UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 2493 0.71 0.989671
Target:  5'- gAAGAgCGGGUGgucCGCGAGCc--GCGCCg -3'
miRNA:   3'- -UUUUgGUCCAU---GUGCUUGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 74519 0.71 0.989671
Target:  5'- --cGCCGGGgcCAUGGcGCUUggGCGCCu -3'
miRNA:   3'- uuuUGGUCCauGUGCU-UGAAa-UGCGG- -5'
23742 3' -46.2 NC_005261.1 + 46473 0.71 0.989671
Target:  5'- cGAAGCgCAGGUGCA---GCUcgGCGCCc -3'
miRNA:   3'- -UUUUG-GUCCAUGUgcuUGAaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 60323 0.71 0.991019
Target:  5'- -cGAUCAGGUGgACGAcgguguuuGCg--GCGCCg -3'
miRNA:   3'- uuUUGGUCCAUgUGCU--------UGaaaUGCGG- -5'
23742 3' -46.2 NC_005261.1 + 98190 0.71 0.991019
Target:  5'- --cGCCGGGgGCGCGGcgggcaGCgg-GCGCCg -3'
miRNA:   3'- uuuUGGUCCaUGUGCU------UGaaaUGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.