miRNA display CGI


Results 1 - 20 of 419 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 4292 0.66 0.779879
Target:  5'- aCGGCCGCgGGCcccgCGGCcG-CCGCGUa- -3'
miRNA:   3'- gGUCGGCG-UCGa---GCCG-CaGGUGCAgg -5'
23742 5' -59.8 NC_005261.1 + 66231 0.66 0.779879
Target:  5'- gCAGCCGCuGCUUGaUGcCCGcCGUCg -3'
miRNA:   3'- gGUCGGCGuCGAGCcGCaGGU-GCAGg -5'
23742 5' -59.8 NC_005261.1 + 41624 0.66 0.770839
Target:  5'- gCGGCUGCGGCccUCGGCGaCCuugaggugcGCGUg- -3'
miRNA:   3'- gGUCGGCGUCG--AGCCGCaGG---------UGCAgg -5'
23742 5' -59.8 NC_005261.1 + 121783 0.66 0.770839
Target:  5'- -uGGCCGCGGC-CGGCGggCugGg-- -3'
miRNA:   3'- ggUCGGCGUCGaGCCGCagGugCagg -5'
23742 5' -59.8 NC_005261.1 + 133338 0.66 0.770839
Target:  5'- gCCGGCaCGCGcGCgCGGCGcugCCGCG-Ca -3'
miRNA:   3'- -GGUCG-GCGU-CGaGCCGCa--GGUGCaGg -5'
23742 5' -59.8 NC_005261.1 + 115415 0.66 0.770839
Target:  5'- gCgGGCgGCAGC-CGGgG-CCGCGgCCc -3'
miRNA:   3'- -GgUCGgCGUCGaGCCgCaGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 60729 0.66 0.770839
Target:  5'- gCCA-CCGCGuGCUC-GUG-CUACGUCCu -3'
miRNA:   3'- -GGUcGGCGU-CGAGcCGCaGGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 101104 0.66 0.770839
Target:  5'- gCGGCCGCGcGCgccUUGGCGcCCucgugGUCCu -3'
miRNA:   3'- gGUCGGCGU-CG---AGCCGCaGGug---CAGG- -5'
23742 5' -59.8 NC_005261.1 + 58539 0.66 0.770839
Target:  5'- cCCAGCCGCcgcccgGGCUCcuGCG-CCGuCGUggCCg -3'
miRNA:   3'- -GGUCGGCG------UCGAGc-CGCaGGU-GCA--GG- -5'
23742 5' -59.8 NC_005261.1 + 103942 0.66 0.770839
Target:  5'- gCCAGaCGCuGCagCGGCGcgaCCGCGgcggCCg -3'
miRNA:   3'- -GGUCgGCGuCGa-GCCGCa--GGUGCa---GG- -5'
23742 5' -59.8 NC_005261.1 + 105187 0.66 0.770839
Target:  5'- gCCGccGCCGCGGCa-GGCucGUCCGCuuUCCc -3'
miRNA:   3'- -GGU--CGGCGUCGagCCG--CAGGUGc-AGG- -5'
23742 5' -59.8 NC_005261.1 + 121087 0.66 0.770839
Target:  5'- gCGGCCGcCAGCgccuccaGGcCGUgCGgGUCCu -3'
miRNA:   3'- gGUCGGC-GUCGag-----CC-GCAgGUgCAGG- -5'
23742 5' -59.8 NC_005261.1 + 58262 0.66 0.770839
Target:  5'- gCCGcGCCGC-GCUCGccGCGcUCACGgggCCg -3'
miRNA:   3'- -GGU-CGGCGuCGAGC--CGCaGGUGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 107719 0.66 0.770839
Target:  5'- gCuGCCGCGGCa-GGCGgCUGCG-CCu -3'
miRNA:   3'- gGuCGGCGUCGagCCGCaGGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 64981 0.66 0.770839
Target:  5'- gCC-GCCGCAGCgcgugcaGGUGcUCCAggagGUCCu -3'
miRNA:   3'- -GGuCGGCGUCGag-----CCGC-AGGUg---CAGG- -5'
23742 5' -59.8 NC_005261.1 + 1993 0.66 0.770839
Target:  5'- aUCGGCgGcCAGUucgCGGgGUCCACGgcgUCg -3'
miRNA:   3'- -GGUCGgC-GUCGa--GCCgCAGGUGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 56970 0.66 0.770839
Target:  5'- uCCGGCaGUGGUUCGGCagcgagcgcgugGaCCACGUCa -3'
miRNA:   3'- -GGUCGgCGUCGAGCCG------------CaGGUGCAGg -5'
23742 5' -59.8 NC_005261.1 + 10751 0.66 0.770839
Target:  5'- cCCGGuCCuCGGcCUCGuCGUCCucguCGUCCu -3'
miRNA:   3'- -GGUC-GGcGUC-GAGCcGCAGGu---GCAGG- -5'
23742 5' -59.8 NC_005261.1 + 95632 0.66 0.770839
Target:  5'- uCCAGgaGCGGCUgGGCGagCGCGa-- -3'
miRNA:   3'- -GGUCggCGUCGAgCCGCagGUGCagg -5'
23742 5' -59.8 NC_005261.1 + 23048 0.66 0.769928
Target:  5'- aCGGCgGCAGCacccucagcuucuUCGuCGUCCucguaguCGUCCu -3'
miRNA:   3'- gGUCGgCGUCG-------------AGCcGCAGGu------GCAGG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.