miRNA display CGI


Results 1 - 20 of 419 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 55849 0.66 0.733603
Target:  5'- cCCGGuCCGC-GC-CGGCGcggaCCAaGUCCa -3'
miRNA:   3'- -GGUC-GGCGuCGaGCCGCa---GGUgCAGG- -5'
23742 5' -59.8 NC_005261.1 + 120251 0.66 0.732652
Target:  5'- --cGCCGCGGCUgccacgcCGGCcGUCUACcGcCCg -3'
miRNA:   3'- gguCGGCGUCGA-------GCCG-CAGGUG-CaGG- -5'
23742 5' -59.8 NC_005261.1 + 86928 0.66 0.743057
Target:  5'- aCCGccGCCGCcGCgcgCGGCGggCugGUCa -3'
miRNA:   3'- -GGU--CGGCGuCGa--GCCGCagGugCAGg -5'
23742 5' -59.8 NC_005261.1 + 3390 0.66 0.737395
Target:  5'- gCCAGCCGCgccggcacuuccgccGGCgggcugaagagCGcGCGggCCAgCGUCCa -3'
miRNA:   3'- -GGUCGGCG---------------UCGa----------GC-CGCa-GGU-GCAGG- -5'
23742 5' -59.8 NC_005261.1 + 65271 0.66 0.743057
Target:  5'- uUCAGCCGguGC-CGGU--CCACGcUCa -3'
miRNA:   3'- -GGUCGGCguCGaGCCGcaGGUGC-AGg -5'
23742 5' -59.8 NC_005261.1 + 15170 0.66 0.743057
Target:  5'- -gGGCguaGCGGCggCGGCGcCCGCGggaaacgCCg -3'
miRNA:   3'- ggUCGg--CGUCGa-GCCGCaGGUGCa------GG- -5'
23742 5' -59.8 NC_005261.1 + 83075 0.66 0.743057
Target:  5'- cCCcGCgGCGGC-CGGCGcuUCCAgCGccUCCa -3'
miRNA:   3'- -GGuCGgCGUCGaGCCGC--AGGU-GC--AGG- -5'
23742 5' -59.8 NC_005261.1 + 35934 0.66 0.733603
Target:  5'- gCAGCC-CAGCg-GGCGcCCAgGcCCg -3'
miRNA:   3'- gGUCGGcGUCGagCCGCaGGUgCaGG- -5'
23742 5' -59.8 NC_005261.1 + 1177 0.66 0.743057
Target:  5'- cCCGcGCCGCGGC-CGGgG-CCGgGgCCg -3'
miRNA:   3'- -GGU-CGGCGUCGaGCCgCaGGUgCaGG- -5'
23742 5' -59.8 NC_005261.1 + 81968 0.66 0.733603
Target:  5'- aCAGCgCGguGUUCGGCGgCUGCG-Cg -3'
miRNA:   3'- gGUCG-GCguCGAGCCGCaGGUGCaGg -5'
23742 5' -59.8 NC_005261.1 + 135754 0.66 0.743057
Target:  5'- cUCAGCCGCGcggugcGCUcCGGCGcagagCGCGUgCCg -3'
miRNA:   3'- -GGUCGGCGU------CGA-GCCGCag---GUGCA-GG- -5'
23742 5' -59.8 NC_005261.1 + 90783 0.66 0.733603
Target:  5'- gCC-GCUGCGGCggcCGGCGcgcgcuaCCGCGUgCg -3'
miRNA:   3'- -GGuCGGCGUCGa--GCCGCa------GGUGCAgG- -5'
23742 5' -59.8 NC_005261.1 + 117733 0.66 0.733603
Target:  5'- gCGGCCGCGcGCU-GGCG-CCGcCGcCCc -3'
miRNA:   3'- gGUCGGCGU-CGAgCCGCaGGU-GCaGG- -5'
23742 5' -59.8 NC_005261.1 + 52837 0.66 0.733603
Target:  5'- -gGGCCGCcucGC-CGGUGUcCCACGUg- -3'
miRNA:   3'- ggUCGGCGu--CGaGCCGCA-GGUGCAgg -5'
23742 5' -59.8 NC_005261.1 + 5508 0.66 0.733603
Target:  5'- -gGGCCGCGGCagCGGCGgcgaggCCGCcggCUu -3'
miRNA:   3'- ggUCGGCGUCGa-GCCGCa-----GGUGca-GG- -5'
23742 5' -59.8 NC_005261.1 + 19382 0.66 0.748686
Target:  5'- gCCAgGCCGUaguagcggGGCUCGGUGaucggcccgugugCCGCG-CCg -3'
miRNA:   3'- -GGU-CGGCG--------UCGAGCCGCa------------GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 51063 0.66 0.743057
Target:  5'- aCGGCgGCuuuCUCGGCGUaCACGgCCc -3'
miRNA:   3'- gGUCGgCGuc-GAGCCGCAgGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 37482 0.66 0.743057
Target:  5'- cCCGG-CGUaucgGGaCUUGGcCGUCCAgGUCCu -3'
miRNA:   3'- -GGUCgGCG----UC-GAGCC-GCAGGUgCAGG- -5'
23742 5' -59.8 NC_005261.1 + 56824 0.66 0.743057
Target:  5'- uCCugguGCCGCGGCggcaCGGCaagaCCugGUUCc -3'
miRNA:   3'- -GGu---CGGCGUCGa---GCCGca--GGugCAGG- -5'
23742 5' -59.8 NC_005261.1 + 4292 0.66 0.779879
Target:  5'- aCGGCCGCgGGCcccgCGGCcG-CCGCGUa- -3'
miRNA:   3'- gGUCGGCG-UCGa---GCCG-CaGGUGCAgg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.