miRNA display CGI


Results 21 - 40 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 3390 0.66 0.737395
Target:  5'- gCCAGCCGCgccggcacuuccgccGGCgggcugaagagCGcGCGggCCAgCGUCCa -3'
miRNA:   3'- -GGUCGGCG---------------UCGa----------GC-CGCa-GGU-GCAGG- -5'
23742 5' -59.8 NC_005261.1 + 1177 0.66 0.743057
Target:  5'- cCCGcGCCGCGGC-CGGgG-CCGgGgCCg -3'
miRNA:   3'- -GGU-CGGCGUCGaGCCgCaGGUgCaGG- -5'
23742 5' -59.8 NC_005261.1 + 68528 0.66 0.752419
Target:  5'- gCCGG-CGCcGC-CGGCGcCCGCGcgCCc -3'
miRNA:   3'- -GGUCgGCGuCGaGCCGCaGGUGCa-GG- -5'
23742 5' -59.8 NC_005261.1 + 87580 0.66 0.752419
Target:  5'- cCCGcGCCGCccaGGC-CGGUGgUCUugGUgCCg -3'
miRNA:   3'- -GGU-CGGCG---UCGaGCCGC-AGGugCA-GG- -5'
23742 5' -59.8 NC_005261.1 + 135754 0.66 0.743057
Target:  5'- cUCAGCCGCGcggugcGCUcCGGCGcagagCGCGUgCCg -3'
miRNA:   3'- -GGUCGGCGU------CGA-GCCGCag---GUGCA-GG- -5'
23742 5' -59.8 NC_005261.1 + 56824 0.66 0.743057
Target:  5'- uCCugguGCCGCGGCggcaCGGCaagaCCugGUUCc -3'
miRNA:   3'- -GGu---CGGCGUCGa---GCCGca--GGugCAGG- -5'
23742 5' -59.8 NC_005261.1 + 57434 0.66 0.752419
Target:  5'- cCCAGgaugcgcacCCGC-GCgaCGGCGUCCGCGa-- -3'
miRNA:   3'- -GGUC---------GGCGuCGa-GCCGCAGGUGCagg -5'
23742 5' -59.8 NC_005261.1 + 3160 0.66 0.752419
Target:  5'- -aGGCCcCGGCggCGGCGgccucuUCCuCGUCCu -3'
miRNA:   3'- ggUCGGcGUCGa-GCCGC------AGGuGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 86928 0.66 0.743057
Target:  5'- aCCGccGCCGCcGCgcgCGGCGggCugGUCa -3'
miRNA:   3'- -GGU--CGGCGuCGa--GCCGCagGugCAGg -5'
23742 5' -59.8 NC_005261.1 + 93459 0.66 0.742115
Target:  5'- aCCGGCCcCAGCgCGGUG-CCggggcgcGCGUCg -3'
miRNA:   3'- -GGUCGGcGUCGaGCCGCaGG-------UGCAGg -5'
23742 5' -59.8 NC_005261.1 + 19382 0.66 0.748686
Target:  5'- gCCAgGCCGUaguagcggGGCUCGGUGaucggcccgugugCCGCG-CCg -3'
miRNA:   3'- -GGU-CGGCG--------UCGAGCCGCa------------GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 25742 0.66 0.752419
Target:  5'- aCCgGGCCGC-GCUCGGCGaUCgAuuUGcCCa -3'
miRNA:   3'- -GG-UCGGCGuCGAGCCGC-AGgU--GCaGG- -5'
23742 5' -59.8 NC_005261.1 + 107689 0.66 0.752419
Target:  5'- gCC-GCCGCGGCgggGGCGccgCCgaACGUCg -3'
miRNA:   3'- -GGuCGGCGUCGag-CCGCa--GG--UGCAGg -5'
23742 5' -59.8 NC_005261.1 + 81401 0.66 0.758915
Target:  5'- cCCGGCCucccCAGCUcccccaggcacaggCGGCGUCguCGgCCg -3'
miRNA:   3'- -GGUCGGc---GUCGA--------------GCCGCAGguGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 5284 0.66 0.752419
Target:  5'- gCCGGCCGCGGUgCGcGCGggucCCugGa-- -3'
miRNA:   3'- -GGUCGGCGUCGaGC-CGCa---GGugCagg -5'
23742 5' -59.8 NC_005261.1 + 101826 0.66 0.752419
Target:  5'- uCCAGCgCGCGGCUgaucuccgcCGcGCGcCCGCcggCCg -3'
miRNA:   3'- -GGUCG-GCGUCGA---------GC-CGCaGGUGca-GG- -5'
23742 5' -59.8 NC_005261.1 + 74951 0.66 0.752419
Target:  5'- gCGGgCGC-GCUCGGCGcgcucgaggCCGCGcgCCc -3'
miRNA:   3'- gGUCgGCGuCGAGCCGCa--------GGUGCa-GG- -5'
23742 5' -59.8 NC_005261.1 + 81968 0.66 0.733603
Target:  5'- aCAGCgCGguGUUCGGCGgCUGCG-Cg -3'
miRNA:   3'- gGUCG-GCguCGAGCCGCaGGUGCaGg -5'
23742 5' -59.8 NC_005261.1 + 2473 0.66 0.752419
Target:  5'- gCCGGgCGCcagGGCUCGGgGaagagcggguggUCCGCGagCCg -3'
miRNA:   3'- -GGUCgGCG---UCGAGCCgC------------AGGUGCa-GG- -5'
23742 5' -59.8 NC_005261.1 + 59726 0.66 0.752419
Target:  5'- cCgGGCgGCAGCggCGGCGcgcggCCGCccUCCa -3'
miRNA:   3'- -GgUCGgCGUCGa-GCCGCa----GGUGc-AGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.