miRNA display CGI


Results 41 - 60 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 31926 0.66 0.761683
Target:  5'- --cGCCGCcGCUgGGCucugCCGCGgcgCCa -3'
miRNA:   3'- gguCGGCGuCGAgCCGca--GGUGCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 81401 0.66 0.758915
Target:  5'- cCCGGCCucccCAGCUcccccaggcacaggCGGCGUCguCGgCCg -3'
miRNA:   3'- -GGUCGGc---GUCGA--------------GCCGCAGguGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 51063 0.66 0.743057
Target:  5'- aCGGCgGCuuuCUCGGCGUaCACGgCCc -3'
miRNA:   3'- gGUCGgCGuc-GAGCCGCAgGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 117733 0.66 0.733603
Target:  5'- gCGGCCGCGcGCU-GGCG-CCGcCGcCCc -3'
miRNA:   3'- gGUCGGCGU-CGAgCCGCaGGU-GCaGG- -5'
23742 5' -59.8 NC_005261.1 + 121087 0.66 0.770839
Target:  5'- gCGGCCGcCAGCgccuccaGGcCGUgCGgGUCCu -3'
miRNA:   3'- gGUCGGC-GUCGag-----CC-GCAgGUgCAGG- -5'
23742 5' -59.8 NC_005261.1 + 135754 0.66 0.743057
Target:  5'- cUCAGCCGCGcggugcGCUcCGGCGcagagCGCGUgCCg -3'
miRNA:   3'- -GGUCGGCGU------CGA-GCCGCag---GUGCA-GG- -5'
23742 5' -59.8 NC_005261.1 + 101826 0.66 0.752419
Target:  5'- uCCAGCgCGCGGCUgaucuccgcCGcGCGcCCGCcggCCg -3'
miRNA:   3'- -GGUCG-GCGUCGA---------GC-CGCaGGUGca-GG- -5'
23742 5' -59.8 NC_005261.1 + 4292 0.66 0.779879
Target:  5'- aCGGCCGCgGGCcccgCGGCcG-CCGCGUa- -3'
miRNA:   3'- gGUCGGCG-UCGa---GCCG-CaGGUGCAgg -5'
23742 5' -59.8 NC_005261.1 + 10751 0.66 0.770839
Target:  5'- cCCGGuCCuCGGcCUCGuCGUCCucguCGUCCu -3'
miRNA:   3'- -GGUC-GGcGUC-GAGCcGCAGGu---GCAGG- -5'
23742 5' -59.8 NC_005261.1 + 3160 0.66 0.752419
Target:  5'- -aGGCCcCGGCggCGGCGgccucuUCCuCGUCCu -3'
miRNA:   3'- ggUCGGcGUCGa-GCCGC------AGGuGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 121783 0.66 0.770839
Target:  5'- -uGGCCGCGGC-CGGCGggCugGg-- -3'
miRNA:   3'- ggUCGGCGUCGaGCCGCagGugCagg -5'
23742 5' -59.8 NC_005261.1 + 103942 0.66 0.770839
Target:  5'- gCCAGaCGCuGCagCGGCGcgaCCGCGgcggCCg -3'
miRNA:   3'- -GGUCgGCGuCGa-GCCGCa--GGUGCa---GG- -5'
23742 5' -59.8 NC_005261.1 + 68528 0.66 0.752419
Target:  5'- gCCGG-CGCcGC-CGGCGcCCGCGcgCCc -3'
miRNA:   3'- -GGUCgGCGuCGaGCCGCaGGUGCa-GG- -5'
23742 5' -59.8 NC_005261.1 + 81968 0.66 0.733603
Target:  5'- aCAGCgCGguGUUCGGCGgCUGCG-Cg -3'
miRNA:   3'- gGUCG-GCguCGAGCCGCaGGUGCaGg -5'
23742 5' -59.8 NC_005261.1 + 65271 0.66 0.743057
Target:  5'- uUCAGCCGguGC-CGGU--CCACGcUCa -3'
miRNA:   3'- -GGUCGGCguCGaGCCGcaGGUGC-AGg -5'
23742 5' -59.8 NC_005261.1 + 107689 0.66 0.752419
Target:  5'- gCC-GCCGCGGCgggGGCGccgCCgaACGUCg -3'
miRNA:   3'- -GGuCGGCGUCGag-CCGCa--GG--UGCAGg -5'
23742 5' -59.8 NC_005261.1 + 126697 0.66 0.769928
Target:  5'- gCCGGCggugcgggaaGCGGCUgguucgcgugCGcguucaaguccaaGCGUCCGCGUCCc -3'
miRNA:   3'- -GGUCGg---------CGUCGA----------GC-------------CGCAGGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 70674 0.66 0.761683
Target:  5'- gCgGGCCGCAcCUCcagccaGGCGUCCAgCGcggCCc -3'
miRNA:   3'- -GgUCGGCGUcGAG------CCGCAGGU-GCa--GG- -5'
23742 5' -59.8 NC_005261.1 + 120251 0.66 0.732652
Target:  5'- --cGCCGCGGCUgccacgcCGGCcGUCUACcGcCCg -3'
miRNA:   3'- gguCGGCGUCGA-------GCCG-CAGGUG-CaGG- -5'
23742 5' -59.8 NC_005261.1 + 15170 0.66 0.743057
Target:  5'- -gGGCguaGCGGCggCGGCGcCCGCGggaaacgCCg -3'
miRNA:   3'- ggUCGg--CGUCGa-GCCGCaGGUGCa------GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.