miRNA display CGI


Results 61 - 80 of 419 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
23742 5' -59.8 NC_005261.1 + 39005 0.66 0.761683
Target:  5'- gCCAGCgCGCccacGCgcaGaGCGUCCGCGagcagcUCCa -3'
miRNA:   3'- -GGUCG-GCGu---CGag-C-CGCAGGUGC------AGG- -5'
23742 5' -59.8 NC_005261.1 + 25742 0.66 0.752419
Target:  5'- aCCgGGCCGC-GCUCGGCGaUCgAuuUGcCCa -3'
miRNA:   3'- -GG-UCGGCGuCGAGCCGC-AGgU--GCaGG- -5'
23742 5' -59.8 NC_005261.1 + 60729 0.66 0.770839
Target:  5'- gCCA-CCGCGuGCUC-GUG-CUACGUCCu -3'
miRNA:   3'- -GGUcGGCGU-CGAGcCGCaGGUGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 10751 0.66 0.770839
Target:  5'- cCCGGuCCuCGGcCUCGuCGUCCucguCGUCCu -3'
miRNA:   3'- -GGUC-GGcGUC-GAGCcGCAGGu---GCAGG- -5'
23742 5' -59.8 NC_005261.1 + 129885 0.66 0.752419
Target:  5'- cUCGGCCGCcauGCggaUGGCcugGUCCACcaugcuGUCCg -3'
miRNA:   3'- -GGUCGGCGu--CGa--GCCG---CAGGUG------CAGG- -5'
23742 5' -59.8 NC_005261.1 + 107689 0.66 0.752419
Target:  5'- gCC-GCCGCGGCgggGGCGccgCCgaACGUCg -3'
miRNA:   3'- -GGuCGGCGUCGag-CCGCa--GG--UGCAGg -5'
23742 5' -59.8 NC_005261.1 + 95632 0.66 0.770839
Target:  5'- uCCAGgaGCGGCUgGGCGagCGCGa-- -3'
miRNA:   3'- -GGUCggCGUCGAgCCGCagGUGCagg -5'
23742 5' -59.8 NC_005261.1 + 83075 0.66 0.743057
Target:  5'- cCCcGCgGCGGC-CGGCGcuUCCAgCGccUCCa -3'
miRNA:   3'- -GGuCGgCGUCGaGCCGC--AGGU-GC--AGG- -5'
23742 5' -59.8 NC_005261.1 + 58539 0.66 0.770839
Target:  5'- cCCAGCCGCcgcccgGGCUCcuGCG-CCGuCGUggCCg -3'
miRNA:   3'- -GGUCGGCG------UCGAGc-CGCaGGU-GCA--GG- -5'
23742 5' -59.8 NC_005261.1 + 66231 0.66 0.779879
Target:  5'- gCAGCCGCuGCUUGaUGcCCGcCGUCg -3'
miRNA:   3'- gGUCGGCGuCGAGCcGCaGGU-GCAGg -5'
23742 5' -59.8 NC_005261.1 + 125432 0.67 0.681335
Target:  5'- -aGGCCGCccaucccuagCGGCGUCCauaGCGUCUa -3'
miRNA:   3'- ggUCGGCGucga------GCCGCAGG---UGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 98130 0.67 0.685261
Target:  5'- --cGCCGCGGCaccggCGGCcGUCgGCGgcaaggCCg -3'
miRNA:   3'- gguCGGCGUCGa----GCCG-CAGgUGCa-----GG- -5'
23742 5' -59.8 NC_005261.1 + 103397 0.67 0.685261
Target:  5'- gCGGCCGCcugcgccuccAGCUCcGCGcgggCCGCGgCCa -3'
miRNA:   3'- gGUCGGCG----------UCGAGcCGCa---GGUGCaGG- -5'
23742 5' -59.8 NC_005261.1 + 22823 0.67 0.685261
Target:  5'- gCCGccGCCGCcguuggcgccgGGCUCGGggaagaacacguCGUCCucgcCGUCCg -3'
miRNA:   3'- -GGU--CGGCG-----------UCGAGCC------------GCAGGu---GCAGG- -5'
23742 5' -59.8 NC_005261.1 + 22742 0.67 0.685261
Target:  5'- gUCGGgCGCGGggCGGCGgcggCCcacGCGUCUg -3'
miRNA:   3'- -GGUCgGCGUCgaGCCGCa---GG---UGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 93667 0.67 0.685261
Target:  5'- aCCGGuCCGCgGGCggCGGCGcCgGCGgggcgCCg -3'
miRNA:   3'- -GGUC-GGCG-UCGa-GCCGCaGgUGCa----GG- -5'
23742 5' -59.8 NC_005261.1 + 33261 0.67 0.685261
Target:  5'- gCCGGCCGUcg--CGGCccccGUCCcCGUCCc -3'
miRNA:   3'- -GGUCGGCGucgaGCCG----CAGGuGCAGG- -5'
23742 5' -59.8 NC_005261.1 + 30332 0.67 0.685261
Target:  5'- gCCGG-CGCGGCU-GGCGgCCGCGcUCg -3'
miRNA:   3'- -GGUCgGCGUCGAgCCGCaGGUGC-AGg -5'
23742 5' -59.8 NC_005261.1 + 101035 0.67 0.685261
Target:  5'- gCGGCCgGCAGC-CGcGCGUagugcuCGUCCg -3'
miRNA:   3'- gGUCGG-CGUCGaGC-CGCAggu---GCAGG- -5'
23742 5' -59.8 NC_005261.1 + 115489 0.67 0.685261
Target:  5'- cUCGGCCGCGGC--GGCGcgCCGCaGcCCc -3'
miRNA:   3'- -GGUCGGCGUCGagCCGCa-GGUG-CaGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.